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Ruchir Rastogi

@rrastogi.bsky.social
73 followers 212 following 0 posts

CS PhD student @ Berkeley | rastogiruchir.github.io

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Reposted by Ruchir Rastogi
AI x Bio Discovery @aixbiobot.bsky.social · 14/03/2025
Evidence Aggregator: AI reasoning applied to rare disease diagnostics [new] Aids rare disease diagnosis by extracting gene variant info from literature. Summarizes observed variants and clinical features, speeding evidence synthesis.
Evidence Aggregator: AI reasoning applied to rare disease diagnosticsFigure 1Figure 2Figure 3
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Reposted by Ruchir Rastogi
Peter Koo @pkoo562.bsky.social · 05/02/2025
[SAVE THE DATE] MLCB 2025 is happening Sept 10-11 at the NY Genome Center in NYC! Attend the premier conference at the intersection of ML & Bio, share your research and make lasting connections! Submission deadline: June 1 More details: mlcb.github.io Help spread the word—please RT! #MLCB2025
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Reposted by Ruchir Rastogi
Anshul Kundaje @anshulkundaje.bsky.social · 25/12/2024
Our ChromBPNet preprint out! www.biorxiv.org/content/10.1... Huge congrats to Anusri! This was quite a slog (for both of us) but we r very proud of this one! It is a long read but worth it IMHO. Methods r in the supp. materials. Bluetorial coming soon below 1/
biorxiv.org
ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants
Despite extensive mapping of cis-regulatory elements (cREs) across cellular contexts with chromatin accessibility assays, the sequence syntax and genetic variants that regulate transcription factor (T...
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