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Louie Lopez

@pinoyplankton.bsky.social
316 followers 238 following 30 posts

Postdoctoral Fellow at the University of Victoria Freshwater ecology | eDNA & eRNA | Environmental monitoring | Community-based monitoring linktr.ee/marklouiedlopez

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Louie Lopez @pinoyplankton.bsky.social · 7h
How can we monitor salmon in remote, rapidly changing watersheds where conventional surveys are hard to implement due to inaccessible sites? In our latest study in Ecological Applications, we used eDNA to detect Pacific salmon in emerging habitats within the Skeena watershed in British Columbia
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Louie Lopez @pinoyplankton.bsky.social · 01/10/2026
Are you developing new and emerging tools for biodiversity monitoring? I am co-editing a special issue in BMC Methods! Feel free to reach out if you are interested in submitting a paper.
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Sara Cannon, PhD @surlyscientist.bsky.social · 24/09/2026
New in @facetsjournal.bsky.social: since 2017, only 6% of 288 Canadian at-risk species advanced toward listing on time. 31 Pacific salmon populations got the same line: info collection "is extensive & underway." No marine fish or mammal got through. doi.org/10.1139/face... 🦤🧪🌏🇨🇦
doi.org
Canada's Species at Risk Act: listing lags and limbos
Canada's Species at Risk Act (SARA) aims to prevent wildlife extinction and facilitate the recovery and management of species imperilled due to human activity. A species may only be included on SARA after scientific assessment and a Cabinet decision. Recommended timelines for each stage of this process were introduced in 2017. We evaluated the influence of these recommendations by comparing delays before and after 2017, focusing specifically on the second stage where timelines are not mandatory. We also analyzed stated causes of delay for each species considered for listing. We found that decisions were made within the timeframe for only 6% of 288 species, and 31% were listed after delays. Critically, 85% of 181 species waiting for a decision have already exceeded recommended timelines. Timeline compliance did not improve after the 2017 policy was introduced (longer median decision times and proportionally fewer species advanced to decision), where decisions exceeded the timelines by an average of 477 days (versus 484 days pre-2017). Certain species groups, particularly marine vertebrates, experienced disproportionate delays, but publicly available information highlighting causes of delays is limited. Despite the intention of the 2017 policy to expedite decision-making, species at risk in Canada continue to wait.
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Erin Hotchkiss @fluvialbenthos.bsky.social · 24/09/2026
We (Biological Sciences at Virginia Tech) are #hiring TWO tenure-track Molecular Microbiology professors! Review of applications starts 1 Nov. I'm happy to answer questions about the department, VT, life in Blacksburg, etc.! More info / to apply: jobs.apply.vt.edu/jobs/assista... 🧪👩‍🔬🦠 #academicjobs
jobs.apply.vt.edu
Assistant/Associate Professor - Blacksburg, Virginia, United States
Job Description The Department of Biological Sciences in the College of Science at Virginia Tech seeks applicants for two (2) tenure-track research and teaching positions at the Assistant/Associate ...
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Sara Cannon, PhD @surlyscientist.bsky.social · 22/09/2026
Excited to share 2 new offerings from UBC's Centre for Indigenous Fisheries! Pls share! Workshop: Positionality, Power & Preparing for Indigenous-Led Work in Fisheries & Aquatic Sciences cif.fish/positionality-power-and-preparing Grad course: FISH506Y Community Driven Science cif.fish/fish506y
Flyer that reads: 

Sharing two upcoming offerings from the CIF! 

2 DAY WORKSHOP: Positionality, Power, and Preparing for Indigenous-Led Work in Fisheries and the Aquatic Sciences
October 26 & 27, 2026

Frameworks for bringing knowledge systems together, including knowledge bridging, weaving, or Etuaptmumk (Two-Eyed Seeing), ask practitioners to engage with a clear sense of our own values, assumptions, and knowledge systems. Despite the growing interest in these multiknowledge collaborations, many of us trained in fisheries and aquatic sciences were never asked to look closely at the assumptions underlying the science we practice, or how our field came to hold authority over fish and water.

In this two-day hybrid workshop, participants will examine those assumptions to begin preparing for work with Indigenous community partners. Individual participation can be entirely virtual as needed.

Who is this for: Non-Indigenous practitioners, and anyone new to community-engaged or Indigenous-led work, across government, NGOs, consulting, industry, and academia. No prior background in this material is required. 

What this is, and isn't: Two days provide a starting point for ethical and responsible community-engaged work with Indigenous researchers, not a credential or a complete toolkit. Participants will leave with a foundation they can build on, and a clearer sense of what they bring into intercultural collaborations. 

To register: 

Registration (CAD): 
- Private sector and government: $500
- NGOs and non-profits: $300
- Students and postdocs: $150

Website: cif.fish/positionality-power-and-preparing

Have questions? Email us at communityscience@oceans.ubc.caGRADUATE COURSE
FISH506Y - Community Driven Science: Developing Tools for Partnered Research with a Focus on Indigenous Communities and Aquatic Science

This graduate-level course at the University of British Columbia is designed to introduce students to critical approaches to and ethical frameworks surrounding scientific practice, with particular focus on aquatic science. This course will focus on contexts specific to the lands and waters where we are situated and will emphasize working in partnership with Indigenous Peoples and Knowledge systems in aquatic science across the lands now known as Canada.

Through action-oriented learning, students will critically examine the colonial legacy of Eurocentric science. They will develop strategies to work in partnership with Indigenous Nations and organizations, fostering relationships built on trust, mutual respect, and shared goals. The course emphasizes co-creation of knowledge, ethical research practices, and the weaving of Indigenous ways of knowing and scientific inquiry, ensuring that research outcomes benefit Indigenous partners and meet their needs and priorities.

By the end of this course, students will be prepared to engage in ethical, transformative research that supports Indigenous sovereignty and advances anti-colonial science. 

To learn more and apply: 

- Course name: FISH506Y
- Term: Term 2 2026/2027 (January - April)
- Credits: 3-credit graduate course
- Format: Wednesdays 1-4 pm in-person
- Website: cif.fish/FISH506Y

Have questions? Email us at communityscience@oceans.ubc.caMeet the Facilitators:

- Dr. Lauren Eckert
Settler of European descent
Postdoctoral Fellow
www.cif.fish/lauren-eckert

- Jared Connoy
Settler of Irish & German descent
PhD candidate
www.cif.fish/jared-connoy

- Dr. Sara Cannon
Settler of Irish & Croatian descent
Postdoctoral Fellow
www.cif.fish/sara-cannon

Have questions? Email us at communityscience@oceans.ubc.ca
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MIDORI 2 @midorireference.bsky.social · 12/09/2026
Making MIDORI2 FAIR: findable, accessible, interoperable, and reusable reference databases The new GB273 release includes nine file formats, including the KRAKEN2 format. All future releases will be deposited on Zenodo to support FAIR practices. zenodo.org/records/2268...
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MIDORI 2 @midorireference.bsky.social · 25/08/2026
MIDORI2 reference databases support the following: 🔹 LONGEST: compact, representative sequences for efficient taxonomic assignment. 🔸 UNIQ: distinct sequence variants and haplotypes for greater intraspecific diversity. Choose based on your research question and taxonomic coverage.
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Louie Lopez @pinoyplankton.bsky.social · 24/08/2026
Midori2 is now on Bluesky!
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MIDORI 2 @midorireference.bsky.social · 24/08/2026
Providing curated mtDNA reference databases for eukaryotic taxonomic assignments. Supporting eDNA research and DNA metabarcoding workflows! 🌐 reference-midori.info Follow for updates on database releases. Let's connect! 🧬🔍 #HelloBluesky #bioinformatics #eDNA #metabarcoding #molecularEcology
reference-midori.info
Home
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Louie Lopez @pinoyplankton.bsky.social · 13/08/2026
📢 Stay up to date with MIDORI2! MIDORI2 is a curated reference database of DNA and amino acid sequences that supports taxonomic assignment for eDNA workflows. Subscribe to the MIDORI2 newsletter for the latest database updates, releases, and version information. www.linkedin.com/newsletters/...
linkedin.com
MIDORI REFERENCE | LinkedIn
Updates and releases for the MIDORI2 mitochondrial DNA reference database
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Society for Conservation Biology @society4conbio.bsky.social · 10/08/2026
"In my community, we already have a natural resource management system practiced by Indigenous people called the Tagal system. It is a way of conserving resources and ensuring they are used sustainably." news.mongabay.com/2026/08/this...
news.mongabay.com
‘This is what’s working’: Indigenous leaders on environment solutions in their communities
Eriberto throws his head back with a laugh and shakes it as he tills his plot of land in the Peruvian Amazon, near the Cordillera Azul National Park in central Peru. “That does not work here,” he says...
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Mathilde L. Tissier @mathildetissier.bsky.social · 06/08/2026
Thank you WPC. "Sheila Colla was widely admired. She was far more than a brilliant scientist and conservation leader. She was a fierce advocate for environmental and social justice and was incredibly skilled and determined at bridging the gap between science, community, and politics."
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Louie Lopez @pinoyplankton.bsky.social · 02/07/2026
Excited to share our latest work exploring how environmental DNA (eDNA) can support Indigenous-led monitoring across Alberta’s Oil Sands Region. www.tandfonline.com/doi/full/10....
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Louie Lopez @pinoyplankton.bsky.social · 17/04/2026
New Perspective paper is out! We reviewed how eDNA is currently used for biodiversity monitoring in Southeast Asia and developed recommendations to strengthen its regional application. onlinelibrary.wiley.com/doi/10.1002/...
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Louie Lopez @pinoyplankton.bsky.social · 07/04/2026
Our paper is out, focusing on design, validation, and implementation considerations for species-targeted eRNA assays to detect presence and physiological state! Some new ideas to ponder. onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Design, Validation, and Implementation Considerations for Species‐Targeted Environmental RNA Assays to Detect Presence and Physiological State
Environmental RNA (eRNA) is emerging as a promising tool for detecting species presence and physiological condition, with its broader adoption expected to benefit from continued refinement of assay d...
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libererofellows.bsky.social @libererofellows.bsky.social · 27/02/2026
We are pleased to announce the 2026 Liber Ero Fellows! liberero.ca/meet-the-fel...
liberero.ca
Meet The Fellows - Liber Ero Fellowship Program
We are pleased to announce the 2026 Liber Ero Fellows!     Mirjam Barrueto Project: Toward one hundred quiet zones: predicting, locating, and managing wolverine reproduction, connectivity, and source-...
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Louie Lopez @pinoyplankton.bsky.social · 26/09/2025
Excited to share our group’s new publication, where we explore how eDNA from water, soil, and air can push the boundaries of biodiversity monitoring. Our perspective is framed around the Kunming-Montreal Global Biodiversity Framework. academic.oup.com/jhered/advan...
academic.oup.com
From Environmental DNA into Actionable Biodiversity Data: Towards the Implementation of the Kunming-Montreal Global Biodiversity Framework
Abstract. Biodiversity is declining at an alarming rate due to ongoing habitat destruction, climate change, pollution, the spread of invasive species, and
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Hakai Institute @hakai.org · 21/08/2025
A new paper uses eDNA tools to confirm Chipewyan Prairie First Nations observations of geological changes in Cowper Lake, Alberta following a historical landslide in the 1940s 🔗 tinyurl.com/hcek4jfc
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Louie Lopez @pinoyplankton.bsky.social · 14/07/2025
New publication alert! Unikseq 2.0 allows you to identify conserved regions within multiple sequence alignment, thus streamlining the process of primer-probe design for targeted and metabarcoding assay development onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Conserved Sequence Identification Within Large Genomic Datasets Using ‘Unikseq2’: Application in Environmental DNA Assay Development
Identification of conserved genomic sequences and their utilisation as anchor points for clade detection and/or characterisation is a mainstay in ecological studies. For environmental DNA (eDNA) assa...
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Louie Lopez @pinoyplankton.bsky.social · 12/06/2025
Our team has just published 125 fully validated qPCR-based eDNA assays, targeting species of conservation relevance across North America. Publication here: onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Environmental DNA (eDNA) Quantitative Polymerase Chain Reaction‐Based Assays for Surveying 125 Taxa of Importance to North America
We present 125 eDNA quantitative real-time polymerase chain reaction (qPCR) assays against animal species of importance to North America. We show how these assays were designed and validated to compl...
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Louie Lopez @pinoyplankton.bsky.social · 06/06/2025
The next step for the eDNA field is to ensure that all data adhere to the FAIR (Findable, Accessible, Interoperable, and Reusable) principles. It’s encouraging to see initiatives like FAIReDNA (fair-edna.github.io/index.html), led by Miwa Takahashi at CSIRO, moving forward.
onlinelibrary.wiley.com
A Metadata Checklist and Data Formatting Guidelines to Make eDNA FAIR (Findable, Accessible, Interoperable, and Reusable)
Environmental DNA (eDNA) has emerged as a transformative tool for biodiversity monitoring and species detection, yet inconsistent metadata practices hinder data interoperability and reuse. To address...
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Louie Lopez @pinoyplankton.bsky.social · 22/04/2025
Reposting to invite contributions to our special issue with Environmental DNA journal (Wiley)! We're excited to showcase current eDNA research across Southeast Asia. Submit your work and help highlight the region’s growing impact in the field!
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Louie Lopez @pinoyplankton.bsky.social · 14/05/2025
Went out with Park Canada to do their regular European green crab monitoring. This time we’re trying to use eDNA passive sampler to see if it could improve detection in the field.
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Eric R. Larson @ericrlarson.bsky.social · 08/05/2025
The result of nearly two decades of work, my coauthors and I have just described two new crayfish species from western North America: introducing the Misfortunate Crayfish and Okanagan Crayfish (doi.org/10.11646/zoo...). More to follow soon, but it should be open access - message if you need a PDF.
doi.org
Genome skimming supports two new crayfish species from the genus Pacifastacus Bott, 1950 (Decapoda: Astacidae) | Zootaxa
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Louie Lopez @pinoyplankton.bsky.social · 22/04/2025
Reposting to invite contributions to our special issue with Environmental DNA journal (Wiley)! We're excited to showcase current eDNA research across Southeast Asia. Submit your work and help highlight the region’s growing impact in the field!
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Louie Lopez @pinoyplankton.bsky.social · 15/04/2025
Glad to be co-chairing a session at CEW 2025 in Victoria, BC! We're calling for abstracts on eDNA/eRNA in ecosystem monitoring, ecotoxicology, and conservation. Join us in advancing molecular tools for environmental management! #CEW2025 #eDNA #eRNA www.ecotoxcan.ca/scientific-p...
ecotoxcan.ca
SCIENTIFIC | Canadian Ecotoxicity Workshop
Scientific program of the Canadian Ecotoxicity Workshop.
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libererofellows.bsky.social @libererofellows.bsky.social · 02/04/2025
We are pleased to announce the 2025 Liber Ero fellows! liberero.ca/meet-the-fel...
liberero.ca
Meet The Fellows - Liber Ero Fellowship Program
We are pleased to announce the 2025 Liber Ero Fellows!     Carrie Ann Adams Project: Protecting Canada’s migrating birds from habitat loss, artificial light attraction, and collisions using weather su...
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IPBES @ipbes.net · 28/03/2025
Our bias towards charismatic species leaves 'ugly' animals behind in conservation efforts. But should looks determine which species we protect?🐡 🎧 @ipbes.net podcast ep feat. the world's ugliest animal "Mr. Blobby": www.podbean.com/ew/pb-j54ym-17ac1d1
bit.ly
Ugly animals are victims of a ‘preservation bias’. It’s time to save them (too) – Pledge Times
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Louie Lopez @pinoyplankton.bsky.social · 30/01/2025
If you are working on the use of environmental DNA in Southeast Asia or collaborating with researchers in the region, we invite you to submit a paper to the Environmental DNA journal's special issue. Deadline of submission is on July 31, 2025. onlinelibrary.wiley.com/page/journal...
onlinelibrary.wiley.com
Environmental DNA Call for Papers - Understanding the Current Use of Environmental DNA in Southeast Asia: Promoting Accessibility through Networking and Capacity Building
Environmental DNA is an open access eDNA journal that provides an international forum for basic & applied research on all areas of eDNA analysis.
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Louie Lopez @pinoyplankton.bsky.social · 10/02/2025
I am happy to share our latest paper in Methods in Ecology and Evolution: "mtGrasp: Streamlined reference-grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources" besjournals.onlinelibrary.wiley.com/doi/full/10....
besjournals.onlinelibrary.wiley.com
mtGrasp: Streamlined reference‐grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources
High-quality, accessible mitogenome sequences are crucial for comparative genomics, phylogenetic constructions and environmental DNA (eDNA) applications. With advancements in sequencing technologi...
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Louie Lopez @pinoyplankton.bsky.social · 30/01/2025
If you are working on the use of environmental DNA in Southeast Asia or collaborating with researchers in the region, we invite you to submit a paper to the Environmental DNA journal's special issue. Deadline of submission is on July 31, 2025. onlinelibrary.wiley.com/page/journal...
onlinelibrary.wiley.com
Environmental DNA Call for Papers - Understanding the Current Use of Environmental DNA in Southeast Asia: Promoting Accessibility through Networking and Capacity Building
Environmental DNA is an open access eDNA journal that provides an international forum for basic & applied research on all areas of eDNA analysis.
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Louie Lopez @pinoyplankton.bsky.social · 09/01/2025
We invite researchers to contribute studies on eDNA use in Southeast Asia, focusing on innovative approaches, biodiversity monitoring, and strategies for overcoming regional challenges. 📅 Submission Deadline: July 31, 2025 #eDNA #Biodiversity #Conservation #SoutheastAsia #EnvironmentalDNA
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