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Manas Sharma

@physwhiz.bsky.social
89 followers 104 following 60 posts

👨‍🔬Postdoc researcher @IISc 🎓PhD (Physics) from UniJena 📽️YouTube (~20k): youtube.com/@PhysWhiz 📸Instagram (~22k): instagram.com/phys.whiz 🌐Resume: manas.bragitoff.com 💻Blog: www.bragitoff.com

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Manas Sharma @physwhiz.bsky.social · 02/12/2025
Hi #compchem #compchemsky Tired of costly 2D materials simulations in VASP? Huge vacuum + dipole corrections = unnecessary compute time. TURBOMOLE eliminates the complications entirely Watch the full workflow (hBN monolayer + Water adsorption) in our latest TmoleX tutorial: youtu.be/6iXuo1DzqB4
youtu.be
Adsorption Energy of Water on 2D Periodic hBN Monolayer using TURBOMOLE and TmoleX [TUTORIAL]
YouTube video by Phys Whiz
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Reposted by Manas Sharma
Martijn Zwijnenburg @zwijcompchem.bsky.social · 26/11/2025
Our work discussing GW-BSE calculations on CdS zincblende 'quantum dots' is now published in Nanoscale pubs.rsc.org/en/content/a... #compchem
pubs.rsc.org
Quantum dot or not? The effect of ligands on the nature of excitations in CdS nanoparticles
We investigate using many-body perturbation theory the optical and electronic properties of neutral cadmium sulfide nanoparticles with the zinc blende structure for which the surface is capped with bi...
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Manas Sharma @physwhiz.bsky.social · 25/11/2025
Most folks know TURBOMOLE for molecules, but its periodic DFT engine is ridiculously good too. With TURBOMOLE simulating materials is a breeze and you don’t need to be a command-line sorcerer to make it work. #compchemsky We just dropped a new tutorial. Check it out www.youtube.com/watch?v=98fg...
youtube.com
TURBOMOLE Tutorial: Silicon Crystal Geometry Optimization, Band Structure and Cohesive Energy
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 18/11/2025
I’ve lost count of how many times people have asked me for an “easy intro” to TURBOMOLE. So I finally made one 😄 Thrilled to partner with Turbomole for a weekly tutorial series! #compchemsky #chemsky Episode 1 is out now 🎥 youtu.be/WN1pUj6FC0g Geom opt + vib freq demonstrated for ibuprofen.
youtu.be
TURBOMOLE Tutorial: Geometry Optimization and Vibrational Frequency Analysis using TmoleX GUI
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 27/09/2025
Your favorite RIPER Tools now has a citation #compchem 👇👇 pubs.acs.org/doi/10.1021/...
pubs.acs.org
Density Functional Theory for Molecular and Periodic Systems in TURBOMOLE: Theory, Implementation, and Applications
This work provides a detailed overview of density functional theory (DFT) methods for treating molecular and periodic systems within the TURBOMOLE software package. The implementation employs Gaussian...
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Manas Sharma @physwhiz.bsky.social · 25/09/2025
Excited to share our article on recent advances in TURBOMOLE for periodic & molecular DFT! #compchemsky Special milestone: some of the final results from my PhD are now published + my 10th paper Grateful to Prof. Marek Sierka & amazing collaborators for the oppurtunity! pubs.acs.org/doi/10.1021/...
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Reposted by Manas Sharma
Ananth Govind Rajan @ananthgr.bsky.social · 01/07/2025
Our work on modeling extended defects in MoS2 is now out in Small! onlinelibrary.wiley.com/doi/10.1002/... We show how size and chemical environment affect nanopore geometry in MoS2, changing pore shapes from irregular to triangular. #2Dmaterials #Nanopores #MaterialsModeling #DefectEngineering
onlinelibrary.wiley.com
Size and Chemical Environment Control Nanopore Geometry in 2D MoS2: From Irregular to Triangular Defects
This work addresses a longstanding challenge of developing a predictive framework for defect topologies in 2D MoS2. By combining density functional theory calculations, kinetic Monte Carlo simulation...
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Manas Sharma @physwhiz.bsky.social · 30/06/2025
Hi #compchem, Now calculate vibrational modes of a molecule using machine learning interatomic potentials (MLIPs) such as UMA (OMol), MACE OMAT-0, MatterSim, 7Net and many more on MLIP Playground (huggingface.co/spaces/Manas...) and yes there is a dark mode
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Manas Sharma @physwhiz.bsky.social · 28/06/2025
What I like the most about the UMA (OMol25) model is that it can take spin and charge as the input. This is a game changer as it allows simulating a large vareity of compounds with correct spin multiplicity. Seems to be quite accurate uptil now in my tests.
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Manas Sharma @physwhiz.bsky.social · 16/06/2025
PySCF users, you're gonna love this! 🎉 CrysX-3D Viewer v1.9.6 now lets you generate PySCF input files (python scripts) for both molecules and periodic systems—instantly from any given chemical structure. Truly a time saver. Update now 👇 bragitoff.com/crysx-3d-vie... #compchem #compchemsky
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Manas Sharma @physwhiz.bsky.social · 09/06/2025
Hi #compchem and #compchemsky community, My cross-platform application, CrysX-3D Viewer, can now directly visualise a material in the materials project database given its material id such as `mp-149`. Download the v1.9.5 now👇 www.bragitoff.com/crysx-3d-vie...
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Manas Sharma @physwhiz.bsky.social · 03/06/2025
Hi #compchemsky and #compchem, You can now adjust the shininess of your molecules in the v1.9.4 of CrysX 3D-Viewer. 👉https://www.bragitoff.com/crysx-3d-viewer/
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Manas Sharma @physwhiz.bsky.social · 26/05/2025
Wanna make #compchem visualisations like these in real-time?🧐 (without installing Blender) ➡️Download CrysX-3D Viewer now! Available on 💻Mac, Windows, Linux and 📱Android. www.bragitoff.com/crysx-3d-vie...
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Manas Sharma @physwhiz.bsky.social · 23/05/2025
Recently, MetaAI released the OMol25 dataset and the UMA model — a powerful foundation model for #compchem community. Now, you can try UMA and 16+ other MLIPs (incl. MACE) on your own systems with an app that I developed: MLIP Playground👇👇 huggingface.co/spaces/Manas...
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Reposted by Manas Sharma
Janine George @molecularxtal.bsky.social · 22/01/2025
🤖 Interested in automated DFT or ab initio calculations for crystals or molecules? atomate2 could be your package! doi.org/10.26434/che... #compchem
doi.org
Atomate2: Modular workflows for materials science
High-throughput density functional theory (DFT) calculations have become a vital element of computational materials science, enabling materials screening, property database generation, and training of...
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Manas Sharma @physwhiz.bsky.social · 05/01/2025
New tutorial for #CompChemSky! Learn how to train a NequIP ML interatomic potential from scratch and predict energies & forces. ➡️ Model overview ➡️Input/Config file explanation ➡️Training, testing & deployment on Kaggle (online platform) youtu.be/xuY5-Pf_Wxc
youtu.be
How to train your first ML Interatomic Potential using NequIP? [TUTORIAL 1]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 04/01/2025
Another tool to make your life easier as a computational chemist #CompChem 🔗 ripertools.turbomole.org
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Manas Sharma @physwhiz.bsky.social · 01/01/2025
Another tutorial for making your life easier in #CompChem Watch or get left behind www.youtube.com/watch?v=OfP6...
youtube.com
How to Download Molecular Structures in Bulk from PubChem Database? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 27/12/2024
New tutorial, who dis? Watch or go broke youtu.be/fn4uqFsD3Zs
youtu.be
How to model the Copper Cu (110) Surface using BURAI? [TUTORIAL for Beginners]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 25/12/2024
Merry Christmas 🎅🎄to #CompChemSky community! Happy modeling!! May all your calculations converge!
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Manas Sharma @physwhiz.bsky.social · 25/12/2024
Merry Christmas🎄🎅 everybody! #CompChem youtu.be/yP1BREWv6u0
youtu.be
How to Create a Graphene Monolayer using VESTA? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 24/12/2024
Just posted a useful video on creating input files for #QuantumESPRESSO 👇👇👇 www.youtube.com/watch?v=aKG1... #CompChem
youtube.com
How to Create QUANTUM ESPRESSO Input Files from POSCAR, CIF, extXYZ Files? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 20/12/2024
👇👇👇👇 #CompChemSky www.bragitoff.com/2024/04/why-...
bragitoff.com
Why is chemical accuracy defined as 1 kcal/mol? [SOLVED] - BragitOff.com
In the field of computational chemistry, the term “chemical accuracy” refers to the ability to calculate thermochemical quantities like enthalpies of formation to…
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Reposted by Manas Sharma
Martijn Zwijnenburg @zwijcompchem.bsky.social · 17/12/2024
New group preprint out on ChemRxiv, just in time for the Christmas break, in which Eimear reports the effect of alkyl termination on the optical and electronic properties of silicon nanoparticles, studied using a combination of (TD-)DFT and GW-BSE doi.org/10.26434/che... #chemsky #compchem
TOC figure for the preprint showing how the optical gap of silicon nanoparticles changes with surface termination and particle size
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Manas Sharma @physwhiz.bsky.social · 16/12/2024
Modeling slabs and surfaces is something that one does routinely as a computational material scientist. This video offers a beginner-friendly method to make it easier #CompChem #CompChemSky 👇👇👇 youtu.be/RDpRaXMfMyg
youtu.be
How to model Cu (100) surface with BURAI? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 15/12/2024
🚨Just released the latest tutorial on modeling an hBN monolayer using VESTA👨‍🏫. I share some useful tips and tricks to improve the visualization so that it only displays the non-equivalent or unique atoms. #CompChem #CompChemSky #ChemSky youtu.be/mNssTAuseRY
youtu.be
How to model hexagonal boron nitride (hBN) monolayer using VESTA? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 11/12/2024
📢New video online #CompChem PS: YouTube has dubbed it in German, French, Spanish, etc. Based on whatever German I understand, it sounds quite accurate www.youtube.com/watch?v=fZU9...
youtube.com
How to Properly Cite VASP in Your Research Papers? [GUIDE]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 10/12/2024
VESTA Tutorial👨‍🏫: How to place an adsorbate over a surface? 💻 www.youtube.com/watch?v=UI3h...
youtube.com
How to Place a Water Molecule on Graphene Using VESTA - A Step-by-Step Tutorial
YouTube video by Phys Whiz
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Reposted by Manas Sharma
Michiel van Setten @mjvansetten.bsky.social · 10/12/2024
In our ab initio modeling group at imec we have two new PhD positions open www.imec-int.com/en/work-at-i... www.imec-int.com/en/work-at-i... application deadline is December 15th.
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Manas Sharma @physwhiz.bsky.social · 09/12/2024
Charge density difference Δ ρ(𝐫) Calculation and Plotting from CUBE Files #CompChem www.youtube.com/watch?v=_1iM...
youtube.com
How to calculate CHARGE DENSITY DIFFERENCE using CUBE Files? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 08/12/2024
Is it too early to be modeling a molecular/atomic Christmas tree??😭 #CompChem
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Manas Sharma @physwhiz.bsky.social · 03/12/2024
📢Hi Computational Chemists and Material Scientists- Just dropped a tutorial on how to calculate and plot planar integrated electron density from a given CUBE file. Go check it out! #CompChem www.youtube.com/watch?v=mhth...
youtube.com
How to calculate Planar Integrated Electron density from a CUBE file? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 29/11/2024
Radial Distribution Functions 📈📉 New video on calculating RDFs from ab initio molecular dynamics trajectories is now up on my YouTube channel. Watch or perish 👇👇👇👇👇 www.youtube.com/watch?v=iTiF...
youtube.com
How to calculate RDF using VMD from VASP AIMD Trajectories? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 27/11/2024
Ever wished to convert a hexagonal unit cell into an orthogonal supercell for your simulations? Well, say no more! My latest tutorial demonstrates the process step-by-step using my web app. #CompChemSky Watch it here👇👇👇 youtu.be/4QlTJ_0LeZM
youtu.be
How to orthogonalize the unit cell of hBN monolayer? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 26/11/2024
Apparently, our recent work on DFT-based embedding for periodic systems is one of the most-read articles in JCTC, in the last 30 days. #CompChemSky 👇👇👇 pubs.acs.org/doi/10.1021/...
pubs.acs.org
Optical Gaps of Ionic Materials from GW/BSE-in-DFT and CC2-in-DFT
This work presents a density functional theory (DFT)-based embedding technique for the calculation of optical gaps in ionic solids. The approach partitions the supercell of the ionic solid and embeds a small molecule-like cluster in a periodic environment using a cluster-in-periodic embedding method. The environment is treated with DFT, and its influence on the cluster is captured by a DFT-based embedding potential. The optical gap is estimated as the lowest singlet excitation energy of the embedded cluster, obtained using a wave function theory method: second-order approximate coupled-cluster singles and doubles (CC2), and a many-body perturbation theory method: GW approximation combined with the Bethe–Salpeter equation (GW/BSE). The calculated excitation energies are benchmarked against the periodic GW/BSE values, equation-of-motion coupled-cluster singles and doubles (EOM-CCSD) results, and experiments. Both CC2-in-DFT and GW/BSE-in-DFT deliver excitation energies that are in good agreement with experimental values for several ionic solids (MgO, CaO, LiF, NaF, KF, and LiCl) while incurring negligible computational costs. Notably, GW/BSE-in-DFT exhibits remarkable accuracy with a mean absolute error (MAE) of just 0.38 eV with respect to experiments, demonstrating the effectiveness of the embedding strategy. In addition, the versatility of the method is highlighted by investigating the optical gap of a 2D MgCl2 system and the excitation energy of an oxygen vacancy in MgO, with results in good agreement with reported values.
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Manas Sharma @physwhiz.bsky.social · 25/11/2024
Another day, another tutorial👨‍🏫👨‍💻 👇👇👇 #CompChemSky #ChemSky #CompChem www.youtube.com/watch?v=FAbn...
youtube.com
How to pack a unit cell (hBN monolayer) with molecules (water)? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 24/11/2024
Hi #comphem, #compchemsky, #chemsky folks! My tutorial on modeling an adsorbate-surface chemical system: www.youtube.com/watch?v=kOqo...
youtube.com
How to place an Adsorbate (water) Molecule on hBN Surface? [TUTORIAL]
YouTube video by Phys Whiz
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Manas Sharma @physwhiz.bsky.social · 16/11/2024
Hi #ChemSky, #CompChem This web app I made👨‍💻, makes packing molecules on top of a surface a breeze🏄‍♂️! Check it out! 👇👇👇👇👇👇 ripertools.turbomole.org
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Manas Sharma @physwhiz.bsky.social · 15/12/2023
📢In my latest tutorial I walk you through the band structure calculation for 2-dimensional MoS2⚛️💻 www.youtube.com/watch?v=q2UG... #DFT #MaterialScience #CompChem
youtube.com
BAND STRUCTURE of MoS2 (2D) layer using TURBOMOLE (RIPER) [TUTORIAL]
In this tutorial, I show in detail, the process to calculate and plot the band structure of a 2D material (MoS2), using the RIPER module of the TURBOMOLE ele...
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Manas Sharma @physwhiz.bsky.social · 11/12/2023
📢My latest tutorial on band structure calculation using the RIPER module of TURBOMOLE program for electronic structure calculations⚛️💻 #CompChem #DFT #MaterialScience www.youtube.com/watch?v=CMqb...
youtube.com
Calculating and Plotting BAND STRUCTURE of SILICON BULK-3D Crystal using TURBOMOLE (RIPER)[TUTORIAL]
In this tutorial, I show in detail, the process to calculate and plot the band structure of a bulk 3D material with Silicon (Cubic Diamond structure) as exam...
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Manas Sharma @physwhiz.bsky.social · 09/12/2023
Wanna learn how to perform periodic DFT calculations with #TURBOMOLE? ⚛️🖥️ Watch my latest tutorial and become the #DFT guru of your group! 👩‍💻 youtu.be/8XIkTT2uPT8?...
youtu.be
How to run a Periodic DFT calculation using RIPER module of TURBOMOLE? [TUTORIAL]
In this tutorial, I show you all how to run a PERIODIC density functional theory (DFT) calculation using the TURBOMOLE's RIPER module in a step-by-step fashi...
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Manas Sharma @physwhiz.bsky.social · 04/12/2023
What is Electron Correlation? In this blog post, I explain the concept of "Electron Correlation"⚛️, which lives rent-free 🏠in any electronic structure theorist's mind🧠 🔗https://www.bragitoff.com/2023/12/what-is-electron-correlation-explained/
bragitoff.com
What is Electron Correlation? [EXPLAINED]
Electronic correlation refers to the interactions between electrons within the electronic structure of a quantum system. In fact, the correlation energy from a correlated quantum chemistry method can ...
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Manas Sharma @physwhiz.bsky.social · 16/11/2023
🧪Ever spent ages gathering molecule structures for your benchmarks or datasets? I feel your pain😤! Well, guess what?! In this blog post, I share a nifty Python script to bulk download chemical structures and other information from the ChemSpider🕷️ database #CompChem www.bragitoff.com/2023/11/auto...
bragitoff.com
Automate Bulk Downloading of Molecular Properties and 3D Structures from ChemSpider with Python and ...
In a previous blog post, I showed how to automate the downloading of 3D molecular structures and properties from PubChem using Python. Today’s…
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Manas Sharma @physwhiz.bsky.social · 07/11/2023
Learn how Python and pubchempy make it easy to access the PubChem database and download 3D molecular structures along with other chemical properties. #CompChem
bragitoff.com
Automate Downloading 3D Molecular Structures and Properties from PubChem with Python - BragitOff.com
Learn how Python and pubchempy make it easy to access the PubChem database and download 3D molecular structures along with other chemical properties. #python #pubchempy #3Dstructures
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Manas Sharma @physwhiz.bsky.social · 05/11/2023
Check out this blog post on how to calculate and plot molecular orbitals using PySCF #CompChem
bragitoff.com
How to calculate and plot molecular orbitals from a DFT/HF calculation using PySCF❓🤔 | TUTORIAL...
In this tutorial, I will show you guys how to calculate and plot molecular orbtials (MO) after density functional theory (DFT) or Hartree-Fock…
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Manas Sharma @physwhiz.bsky.social · 31/10/2023
📢Are you interested in getting hands-on experience with subsystem-DFT or DFT-in-DFT embedding? Don't worry, I have made a web app that can perform both frozen density embedding and projection-based embedding calculations in the cloud. #CompChem #DFT
bragitoff.com
CrysX DEMO: DFT based Embedding - BragitOff.com
This is an online interactive demo of various density functional theory (DFT) based embedding techniques like Frozen Density Embedding and Projection-based Embedding. It…
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Manas Sharma @physwhiz.bsky.social · 30/10/2023
🌟🧬🎬 Want to bring molecules to life? Check out my this blog post on creating molecular animations using Jmol! 🎥🔬 #CompChem #DFT
bragitoff.com
Creating Molecular Animations as Movies or GIFS using Jmol and FFmpeg - BragitOff.com
Jmol is an open-source Java viewer for chemical structures in 3D. It is a useful tool for computational material scientists, chemists, and biologists to visualize and…
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Manas Sharma @physwhiz.bsky.social · 29/10/2023
📢Looking to convert between #CompChem file formats? Look no further! My web app has got you covered! 🔗https://www.bragitoff.com/2022/08/crysx-compchem-file-converter-web-app/
bragitoff.com
CrysX - CompChem File Converter [WEB APP] - BragitOff.com
Chemical File Format Converter The following is the Web Application built using Python, Open Babel, Py3Dmol and Streamlit that allows inter-conversion between various…
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Manas Sharma @physwhiz.bsky.social · 27/10/2023
📢I am sharing a list of my favorite freely available molecular or crystal structure visualization software #CompChem #DFT
bragitoff.com
List of freely available molecular or crystal structure visualization software - BragitOff.com
When I first got into density functional theory (DFT) calculations (in 2017), the first crystal structure visualizer I used was BURAI (which is…
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