My new package Coreset is now on CRAN.
ms609.github.io/Coreset/
Use its MaxMin Diversity selector to obtain an unbiased and representative subsample of most parsimonious trees (paper forthcoming...)
ms609.github.io
Discrete Diversity, Dispersion, and Coverage Subset Selection
Solves discrete location objectives on a distance matrix or Euclidean coordinate set. The Max-Min Diversity (MMDP / p-dispersion) objective, which maximizes the minimum pairwise distance within a sele...