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Oliver Berkowitz

@oliverberkowitz.bsky.social
601 followers 168 following 222 posts

Plant Biologist | Genomics & Phenotyping Australian Plant Phenomics Network La Trobe Institute of Sustainable Agriculture & Food (LISAF) APPN: www.plantphenomics.org.au LISAF: www.latrobe.edu.au/research/lisaf 🇦🇺🇩🇪🇪🇺 ⚽️🖤💛🏉

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Reposted by Oliver Berkowitz
Lucas Auroux @aurouxlucas.bsky.social · 25/08/2026
Seeds in suspension: Cell type-specific control of seed dormancy and germination initiation sciencedirect.com/science/arti... @latrobe.edu.au
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Oliver Berkowitz @oliverberkowitz.bsky.social · 13/07/2026
👍👇
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Oliver Berkowitz @oliverberkowitz.bsky.social · 19/05/2026
Growing tomatoes in protected cropping environments? Then you might be interested in our case study investigating how optimising nitrogen supply improves growth parameters and yield. #APPN #LISAF #pchub www.plantphenomics.org.au/resources/ca...
plantphenomics.org.au
Cultivating for success: Optimising cherry tomato cultivation
APPN infrastructure has helped improve understanding of key efficiency drivers in high production, protected environment horticulture systems.
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Oliver Berkowitz @oliverberkowitz.bsky.social · 08/05/2026
Our paper on P limitation responses in hemp is out. Great work by former PhD student Ben Wee Y. @latrobe.edu.au We provide new insight into how hemp maintains reproductive growth and nutrient balance under fluctuating phosphate supply. www.sciencedirect.com/science/arti...
sciencedirect.com
Phosphate availability shapes source–sink dynamics and nitrogen balance in dual-purpose hemp (Cannabis sativa L.): Insights from physiological and transcriptomic analyses
Cannabis sativa L., one of the earliest domesticated crops, was selectively bred into drug-type (high phytocannabinoid yield) and hemp-type (fibre, hu…
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Oliver Berkowitz @oliverberkowitz.bsky.social · 28/04/2026
Nice work Marta et al
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Oliver Berkowitz @oliverberkowitz.bsky.social · 25/04/2026
Can't really disclose any details about the experiment yet, but first results look promising. #Micro-Tom sugo.
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Reposted by Oliver Berkowitz
Abiotic Stress in Plants @abioticstress.bsky.social · 20/04/2026
Rewiring an E3 #ligase enhances #cold resilience and #phosphate use in #maize www.nature.com/articles/s41... #PlantScience #PlantSci #SciComm @nature.com @natprot.nature.com @natplants.nature.com @planttreaty.bsky.social @plantoscope.bsky.social @plantevoeco.bsky.social @healthycrops.bsky.social
nature.com
Rewiring an E3 ligase enhances cold resilience and phosphate use in maize - Nature
The E3 ubiquitin ligase NLA postively regulates cold tolerance and negatively regulates phosphate uptake in maize, and a genetically engineered variant of this enzyme leads to improved cold ...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 14/04/2026
Our paper on PacBio transcriptome assemblies for two drug-type Cannabis chemotypes is out. acsess.onlinelibrary.wiley.com/doi/10.1002/...
acsess.onlinelibrary.wiley.com
Transcriptome assemblies for two drug‐type cannabis chemotypes by long‐read RNA sequencing
Generation of transcriptomes for two contrasting cannabis chemotypes by PacBio Iso-Seq serve as crucial resource for further functional studies. More than 50,000 transcripts covered 60% of gene loci...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 08/04/2026
www.cell.com/molecular-pl...
cell.com
Phase separation of the redox sensor RCD1 mediates differential ROS signals to regulate plant growth and stress responses
This study demonstrates that RCD1 functions as a redox sensor that perceives ROS signals and undergoes a ROS-triggered phase separation transition, fine-tuning ROS signaling in response to development...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 23/03/2026
Turned out not too bad
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Reposted by Oliver Berkowitz
Lewsey Lab @lewseylab.bsky.social · 19/03/2026
Latest from the lab - a comparative transcriptomic analysis of glandular trichomes from cannabis, hops and tomato plants. In it we identify which transcriptional regulators are shared and which are not doi.org/10.1111/tpj..... We also provide big datasets of gene expresison across several organs.
doi.org
Insights into glandular trichome biology from analysis of organ‐specific gene expression programmes in cannabis, hop and tomato
This study of three glandular trichome-producing species (cannabis, hop and tomato) defines tissue-specific transcriptomic atlases for five organs (trichome, flower, leaf, stem and root), providing c...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 19/03/2026
Interested in plant trichomes ? Check out our new paper from the @lewseylab.bsky.social. Nice work Mulu, Bhavna and rest of team ! onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Insights into glandular trichome biology from analysis of organ‐specific gene expression programmes in cannabis, hop and tomato
This study of three glandular trichome-producing species (cannabis, hop and tomato) defines tissue-specific transcriptomic atlases for five organs (trichome, flower, leaf, stem and root), providing c...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 09/03/2026
Nice day for koala spotting
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Oliver Berkowitz @oliverberkowitz.bsky.social · 03/03/2026
OsWRI1a coordinates systemic growth responses to nitrogen availability in rice | Science www.science.org/doi/10.1126/...
science.org
OsWRI1a coordinates systemic growth responses to nitrogen availability in rice
Nitrogen (N) deficiency–induced increases in the root-to-shoot biomass ratio in plants are adaptive in nature but suboptimal for agriculture. Understanding the regulatory mechanisms governing this dev...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 23/02/2026
SCALPEL: A pipeline for processing large-scale spatial transcriptomics data www.biorxiv.org/content/10.6...
biorxiv.org
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Oliver Berkowitz @oliverberkowitz.bsky.social · 17/02/2026
As a genomics journal, is converting a 10 MB Supplemental Table from Excel to PDF state-of-the-art ? Good luck to the reviewers sorting through 14,000 pages....
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Reposted by Oliver Berkowitz
bioRxiv Plant Bio @biorxiv-plants.bsky.social · 14/02/2026
CAN1-mediated autophagosome size regulation fine-tunes phosphate starvation tolerance in Arabidopsis thaliana www.biorxiv.org/content/10.64898/20…
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Oliver Berkowitz @oliverberkowitz.bsky.social · 11/02/2026
Interested in plant phenotyping, hyperspectral imaging and ML-driven data analysis? Then apply and join us. @latrobeuni.bsky.social #APPN #hypetspectral #plantphenotyping internaljobs.latrobe.edu.au/cai/en/job/5...
internaljobs.latrobe.edu.au
Details - Research Associate – Plant Phenotyping, La Trobe University
Jobs at La Trobe University
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Oliver Berkowitz @oliverberkowitz.bsky.social · 08/02/2026
www.annualreviews.org/content/jour...
annualreviews.org
Metabolism, Perception, and Functions of Inositol (Pyro)Phosphates in Plants
Inositol phosphates and pyrophosphates are small, water-soluble molecules involved in a range of physiological processes across eukaryotic organisms, including plants. Over the past two decades, signi...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 05/02/2026
academic.oup.com/genetics/adv...
academic.oup.com
Recent major changes to TAIR: updates to the database, website, and Arabidopsis genome
Abstract. The Arabidopsis Information Resource (TAIR) is the primary knowledgebase for Arabidopsis thaliana, providing curated genetics and genomics data,
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Oliver Berkowitz @oliverberkowitz.bsky.social · 01/02/2026
Nick Cave and the Bad Seeds. Just awesome.
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Oliver Berkowitz @oliverberkowitz.bsky.social · 30/01/2026
www.science.org/doi/10.1126/...
science.org
Aging drives a program of DNA methylation decay in plant organs
Plants display a wide range of life spans and aging rates. Although dynamic changes to DNA methylation are a hallmark of aging in mammals, it is unclear whether similar molecular signatures reflect ra...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 07/01/2026
www.cell.com/trends/plant...
cell.com
Phosphorus acquisition and pathogen defense: synergies versus trade-offs
During their life cycle, plants encounter simultaneous biotic and abiotic stresses. A low availability of inorganic phosphorus (P) commonly limits plant growth in natural and agricultural ecosystems. ...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 05/01/2026
www.cell.com/molecular-pl...
cell.com
Genetic improvement of nitrogen- and phosphorus-use efficiency in crops: Old goals with new aspirations
This review synthesizes recent genetic advances in crop nitrogen- and phosphorus-use efficiency (NUE and PUE), highlighting key genes and their natural variations that underpin adaptation to soil cond...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 27/12/2025
Sending two PhD students into the world. Well done Viet D Nguyen and Benjamin Wee
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Oliver Berkowitz @oliverberkowitz.bsky.social · 26/12/2025
www.cell.com/molecular-pl...
cell.com
A Single-Cell-Resolution Spatial Transcriptomic Atlas Decodes Wheat Spike Development and Yield Potential
Summary: This study presents a comprehensive single-cell resolution spatial transcriptomic atlas of wheat spike development across five key developmental stages. By resolving cell-type-specific phytoh...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 04/12/2025
Explains how I feel... 😄 www.nature.com/articles/d41...
nature.com
We are all mosaics: vast genetic diversity found between cells in a single person
Technical advances allow researchers to trace the genetic changes that occur over time.
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Oliver Berkowitz @oliverberkowitz.bsky.social · 04/12/2025
Trying to submit a paper: Step 1: Build pdf from pdfs - fail Step 2: Please upload Supp Tables in Excel 2000 format... 😱
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Reposted by Oliver Berkowitz
Max Planck Institute of Molecular Plant Physiology 🌱🧪 @mpi-mp-potsdam.bsky.social · 28/11/2025
Looking for a #PhDposition in #PlantScience ? Our #IMPRS @mpi-mp-potsdam.bsky.social and @unipotsdam.bsky.social is #hiring ! 📅 Apply by 10 January 2026 More info: 👉 www.mpimp-golm.mpg.de/IMPRS-PhD Please share this post to plant it in the right feed 🌱 #PlantSciJobs
Graphic with Arabidopsis thaliana plant. It says in the text: We're hiring: 5 PhD positions, apply by 10 January, 2026. Over the caption, there are keywords: Plant Physiology, Epigenetics, Biotechnology, Cell Biology, Bioinformatics. At the bottom there are logos of IMPRS, Max Planck Institute of Molecular Plant Physiology, University of Potsdam and the Max Planck Society.
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Oliver Berkowitz @oliverberkowitz.bsky.social · 27/11/2025
academic.oup.com/plphys/artic...
academic.oup.com
Function and regulatory mechanism of HvSPX4 in maintaining phosphate homeostasis in barley
A 50-bp insertion in the promoter region of HvSPX4 enhances its expression and is associated with reduced plant growth in a natural barley population under
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Oliver Berkowitz @oliverberkowitz.bsky.social · 27/11/2025
academic.oup.com/plphys/artic...
academic.oup.com
Activation of alternative oxidase ensures carbon supply for ethylene and carotenoid biosynthesis during tomato fruit ripening
The alternative oxidase pathway is post-translationally activated at the onset of climacteric ripening for promoting carbon mobilization toward ethylene an
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Oliver Berkowitz @oliverberkowitz.bsky.social · 26/11/2025
www.nature.com/articles/s41...
nature.com
Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model - Nature Methods
By leveraging both deep learning and hidden Markov models, Helixer achieves broad taxonomic coverage for ab initio gene annotation of eukaryotic genomes from fungi, plants, vertebrates and invertebrat...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 22/11/2025
Stolle done
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Oliver Berkowitz @oliverberkowitz.bsky.social · 21/11/2025
www.science.org/doi/10.1126/...
science.org
CRISPR-Cas–mediated heritable chromosome fusions in Arabidopsis
The genome of Arabidopsis thaliana consists of 10 chromosomes. By inducing CRISPR-Cas–mediated breaks at subcentromeric and subtelomeric sequences, we fused entire chromosome arms, obtaining two eight...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 20/11/2025
www.biorxiv.org/content/10.1...
biorxiv.org
PlantCV v4: Image analysis software for high-throughput plant phenotyping
PlantCV is an open-source Python project aimed at developing tools to address a range of image-based, plant phenotyping questions. PlantCV has been used for more than 10 years to automate trait collec...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 15/11/2025
acsess.onlinelibrary.wiley.com/doi/10.1002/...
acsess.onlinelibrary.wiley.com
The future role of regional research infrastructures and networks toward the global plant phenotyping community
Regional plant phenotyping research infrastructures and networks hold unique positions. Stronger collaboration between them can provide added benefits to a global community. A concept for a “global .....
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Oliver Berkowitz @oliverberkowitz.bsky.social · 08/11/2025
academic.oup.com/jxb/article/...
academic.oup.com
SlMIPS2, a myo-inositol phosphate synthase, regulates phosphate homeostasis by influencing SlPHL1 and SlSPX2 levels in tomato seedlings
In tomato the myo -inositol phosphate synthase gene SlMIPS2 is sharply induced early in phosphate starvation, and SlMIPS2 regulates cellular InsP6 levels a
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Oliver Berkowitz @oliverberkowitz.bsky.social · 07/11/2025
www.science.org/doi/10.1126/...
science.org
Postdomestication selection of MKK3 shaped seed dormancy and end-use traits in barley
Anthropogenic selection of grain traits such as dormancy has shaped the developmental trajectories of crops. In cereals, shortening dormancy provides rapid and even post-harvest germination, but incre...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 06/11/2025
www.science.org/doi/10.1126/...
science.org
Unlocking the potential of brassinosteroids: A path to precision plant engineering
Brassinosteroids are essential plant hormones that play a central role in regulating growth, development, and stress responses. Their impact on plant architecture and productivity makes them attractiv...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 05/11/2025
www.cell.com/developmenta...
cell.com
Phosphorus availability controls flowering time through subcellular reprogramming of bGLU25 and GRP7 in Arabidopsis
Cho et al. reveal that low phosphorus triggers bGLU25 to move from the ER to the cytosol, where it interacts with GRP7 via AtJAC1. This interaction increases FLC expression, delaying flowering and hig...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 05/11/2025
www.cell.com/molecular-pl...
cell.com
An incoherent feed-forward loop coordinates nitrate uptake and tillering in wheat
This study identifies that TaNLP3 acts as a master regulator of nitrate signaling and interacts with the SWI/SNF chromatin remodeling complex to enhance chromatin accessibility and trigger the primary...
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Reposted by Oliver Berkowitz
Journal of Experimental Botany @jxbotany.bsky.social · 03/11/2025
🚨 SPECIAL ISSUE - CLOSING SOON 🚨 🌿🟡 Sulfur Signaling 🟡 🌿 📝 Edited by Markus Wirtz, Stan Kopriva & Hideki Takahashi 📅 Deadline: 30 November 2025 📄 We welcome contributions! Got an manuscript in mind? Contact JXB office 👉 bit.ly/JXBissues #JXBspecialissues #PlantScience 🧪 @sebiology.bsky.social
bit.ly
Upcoming and open special issues
The special issues listed in the table below are currently open for submissions or are due to be published soon. If you have a manuscript that you think is appr
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Oliver Berkowitz @oliverberkowitz.bsky.social · 30/10/2025
www.nature.com/articles/d41...
nature.com
Plants have a secret language that scientists are only now starting to decipher
Signals from the plant cell wall help to orchestrate growth, reproduction and immune function. Can harnessing this molecular cross talk help in creating better crops?
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Reposted by Oliver Berkowitz
Ksenia Krasileva @kseniakrasileva.bsky.social · 29/10/2025
🚀 New preprint! We introduce K-PROB, a k-mer–based Bayesian framework that mines pangenomic promoter and expression diversity to predict cis-regulatory elements driving gene expression variation in crops 🌽🌱 🔗 biorxiv.org/content/10.1101/2025.10.27.684862v1 #Genomics #GeneRegulation #Maize #Soybean
biorxiv.org
Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes
Understanding the genetic code of cis-regulatory elements (CREs) is essential for engineering gene expression and modulating agronomic traits in crops. In plants, CREs underlying rapid evolution of ge...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 30/10/2025
www.nature.com/articles/s41...
nature.com
A pangenome and pantranscriptome of hexaploid oat - Nature
A pangenome of oat, assembled from 33 wild and domesticated oat lines, sheds light on the evolution and genetic diversity of this cereal crop and will aid genomics-assisted breeding to improve product...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 23/10/2025
www.nature.com/articles/d41...
nature.com
Are these the happiest PhD students in the world?
Brazil, Australia and Italy have the highest satisfaction scores in Nature’s global 2025 PhD survey — but are these nations really the best places to do a doctorate?
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Oliver Berkowitz @oliverberkowitz.bsky.social · 23/10/2025
www.sciencedirect.com/science/arti...
sciencedirect.com
Time-resolved fluorescent proteins expand fluorescent microscopy in temporal and spectral domains
Fluorescence microscopy has been widely applied in the life sciences. While intensity as a steady-state signal is widely used, the time-resolved (tr) …
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Oliver Berkowitz @oliverberkowitz.bsky.social · 20/10/2025
www.sciencedirect.com/science/arti...
sciencedirect.com
The RLI1-OsPUB77-OsBZR3 module mediates the crosstalk between phosphate starvation and brassinosteroid signaling pathways to shape rice shoot architecture
Plant architecture is a critical agronomic trait directly affecting planting density and crop yield. Phosphate starvation in rice (Oryza sativa) leads…
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Oliver Berkowitz @oliverberkowitz.bsky.social · 20/10/2025
www.nature.com/articles/s41...
nature.com
H2O2-mediated oxidation of PHOSPHATE STARVATION RESPONSE2 promotes adaptation to low phosphate in rice - Nature Communications
Phosphorus is an essential plant nutrient. Here Meng et al. show that low phosphorus availability stimulates hydrogen peroxide production which in turn promotes the oligomerization, nuclear translocat...
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Oliver Berkowitz @oliverberkowitz.bsky.social · 20/10/2025
Engineering crop flower morphology facilitates robotization of cross-pollination and speed breeding: Cell www.cell.com/cell/fulltex...
cell.com
Engineering crop flower morphology facilitates robotization of cross-pollination and speed breeding
A genome editing and AI-driven robotic system that overcomes floral barriers to facilitate automated hybrid breeding in tomato and soybean.
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