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Oleg Dmytrenko

@olehdmy.bsky.social
141 followers 184 following 21 posts

Head of Synthetic Phage Biology Group, Research Center Jülich www.fz-juelich.de/en/ibg/ibg-1/rese…

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Oleg Dmytrenko @olehdmy.bsky.social · 01/10/2026
Today is the Day of the Armed Forces of Ukraine. This day is a reminder that we are able to do science and live in peace only because Ukrainian servicemen and women are holding the frontline - defending our shared values, freedom, and democracy.
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Sorek Lab @soreklab.bsky.social · 08/09/2026
An exciting study showing how understanding bacterial immunity reveals new functions in human biology. Congratulations François and colleagues!
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Oleg Dmytrenko @olehdmy.bsky.social · 03/09/2026
Heading home from the institute on an ICE. My train was cancelled, the next one is delayed and packed to the brim. Some people are working, others sleeping. Every new announcement is met with resigned laughter. Conversations around me: AI and Russian drones. Just a normal Thursday evening in 2026.
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Helmholtz-Zentrum für Infektionsforschung (HZI) @helmholtzhzi.bsky.social · 01/09/2026
🚨 Looking for a PhD opportunity in infection research? HZI offers 16 fully funded PhD positions across Germany, covering topics from basic science to translational innovation. 📍 Braunschweig, Würzburg, Hannover & Saarbrücken 📅 Apply by 11 September Learn more: jobs.helmholtz-hzi.de/job/Braunsch...
Collage of nine portraits of young persons in front of different colorful backgrounds
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Helmholtz Institute Würzburg @helmholtz-hiri.bsky.social · 24/08/2026
🚨 The #HIRI & the Faculty of Medicine of the @uni-wuerzburg.de invite applications for 2️⃣ JUNIOR PROFESSORSHIPS in: 🔵 RNA-BASED INFECTION RESEARCH 🔵 MICROBIAL RNA BIOLOGY 🔵 RNA-BASED MEDICINE Apply by September 21: www.helmholtz-hiri.de/en/jobs-tale... Find an overview in this thread. 🧵👇 (1/5)
helmholtz-hiri.de
W1 Groups
The Faculty of Medicine of the Julius-Maximilians-University of Würzburgand theHelmholtz Institute for RNA-based Infection Research (HIRI, Würzburg)jointly open a call for
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Oleg Dmytrenko @olehdmy.bsky.social · 01/09/2026
I have an open PhD position in my new Synthetic Phage Biology Lab at Research Centre Jülich. Join us to discover bacterial antiphage trickery! Please, apply and spread the word. recruiting.fz-juelich.de/jobposting/c...
recruiting.fz-juelich.de
PhD Position – Biology and application of bacterial antiphage defenses
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Oleg Dmytrenko @olehdmy.bsky.social · 04/07/2026
250 🇺🇸🎉
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Oleg Dmytrenko @olehdmy.bsky.social · 28/06/2026
30 years of the Ukrainian Constitution 🇺🇦! Ukraine is a sovereign, independent, democratic, social, rule-of-law state. Ukraine’s territory is indivisible and inviolable. Every individual’s life, health, honor, dignity, personal inviolability, and security is recognized as the highest social value.
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Nature Reviews Microbiology @natrevmicro.nature.com · 06/02/2026
New online! The paradox of immune systems conservation between prokaryotes and eukaryotes
dlvr.it
The paradox of immune systems conservation between prokaryotes and eukaryotes
Nature Reviews Microbiology, Published online: 05 February 2026; doi:10.1038/s41579-026-01284-0The widespread prokaryotic immune systems, in particular restriction–modification, CRISPR–Cas and defensive toxin–antitoxin systems, are absent in eukaryotes, whereas relatively rare ones, such as Argonautes and antiviral STAND NTPases, became central to eukaryotic innate immunity. In this Comment, we hypothesize that the cause of this paradox is the drastic reduction of horizontal gene transfer rate in eukaryotes.
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Helmholtz Institute Würzburg @helmholtz-hiri.bsky.social · 07/01/2026
The #CRISPR “gene scissors” have become an important basis for genome-editing technologies in many fields. 🧬✂️ A team from the #HIRI in Würzburg has now demonstrated that these CRISPR-Cas systems are even more versatile than previously thought. Read more: www.helmholtz-hiri.de/en/newsroom/...
helmholtz-hiri.de
Beyond gene scissors: New CRISPR mechanism discovered
Team from Würzburg, Braunschweig, and the US identifies Cas12a3 nuclease showing precise activity | Study just published in Nature
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Helmholtz-Zentrum für Infektionsforschung (HZI) @helmholtzhzi.bsky.social · 07/01/2026
#CRISPR kann mehr als gedacht: Ein Team des @helmholtz-hiri.bsky.social hat mit Forschenden des HZI & aus den USA eine neue Nuklease entschlüsselt: In @nature.com zeigen sie, dass Cas12a3 Transfer-Ribonukleinsäuren schneidet, um infizierte Zellen lahmzulegen. www.helmholtz-hzi.de/media-center...
Kryo-Elektronenmikroskopaufnahme der Nuklease Cas12a3 mit einer illustrierten Schere
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Oleg Dmytrenko @olehdmy.bsky.social · 07/01/2026
Our paper is out! Hiding in plain sight among Cas12a nucleases, Cas12a3 cleaves not its RNA target but the 3′ ends of tRNA. Huge thanks to all who made this possible, especially the Beisel lab, Biao & Dirk for the structure, & @sebastianglatt.bsky.social for all things tRNA. doi.org/10.1038/s415...
nature.com
RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity - Nature
Cas12a3 nucleases constitute a distinct clade of type V CRISPR–Cas bacterial immune systems that preferentially cleave the 3′ tails of tRNAs after recognition of target RNA to induce growth arres...
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Oleg Dmytrenko @olehdmy.bsky.social · 24/04/2025
Russia is a terrorist state!
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Oleg Dmytrenko @olehdmy.bsky.social · 05/03/2025
Preprint alert: Putative phages with dsRNA genomes. Intriguing what bacteria they may infect. Nature’s diversity continues to astonish! www.biorxiv.org/content/10.1...
biorxiv.org
“Paraxenoviridae”, a putative family of ubiquitous marine bacteriophages with double-stranded RNA genomes
Fragmented and primer Ligated DsRNA Sequencing (FLDS) was used to reconstruct five complete, bisegmented RNA genomes of paraxenoviruses, a group of viruses that was previously identified in the ocean ...
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The Kyiv Independent @kyivindependent.com · 03/03/2025
The Russian spelling and pronunciation of Kyiv throughout the ages was no accident. While the name gets its origin from an empire that predates Russia, a series of policies by the Russian Empire and the Soviet Union that sought to Russify Ukraine and the Ukrainian language distorted its roots.
kyivindependent.com
Kyiv, not Kiev — How Ukrainians reclaimed their capital
For decades, if not more, English speakers the world over referred to Ukraine’s capital as Kiev, pronouncing it kee-yev. Few people knew they were using the Russian name for the city. The city is pro...
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Oleg Dmytrenko @olehdmy.bsky.social · 24/02/2025
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Oleg Dmytrenko @olehdmy.bsky.social · 18/02/2025
I’m very fortunate to be at the 2025 CRISPR Meeting in Christchurch to share our latest work on the quirky Cas12a diversity. What an amazing crowd and location! @crisprmeeting.bsky.social
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Oleg Dmytrenko @olehdmy.bsky.social · 01/02/2025
The diversity of microbial defenses is amazing! Type IV Thoeris system shows an ancient innate immunity mechanism which uses a TIR protein to make N7-cADPR, activating a caspase-like protease to block phages. Learn more: www.science.org/doi/10.1126/...
science.org
TIR signaling activates caspase-like immunity in bacteria
Caspase family proteases and Toll/interleukin-1 receptor (TIR)-domain proteins have central roles in innate immunity and regulated cell death in humans. We describe a bacterial immune system comprisin...
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Sorek Lab @soreklab.bsky.social · 30/01/2025
Our paper out @Nature: CARD domains mediate anti-phage defense in bacterial gasdermin systems CARDs are essential for caspase recruitment during human inflammasome activation. We now find them in bacterial immune systems Congrats Tana Wein! Thank you Kranzusch lab! www.nature.com/articles/s41...
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Oleg Dmytrenko @olehdmy.bsky.social · 26/01/2025
Das Ende einer Ära: Heute fand die allerletzte Klasse in meinem geliebten Yogastudio statt, das mir in den letzten sechs Jahren ein Zufluchtsort war. Danke, Clau, für all die Posen und erholsamen Savasanas.
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Oleg Dmytrenko @olehdmy.bsky.social · 21/01/2025
This is just wild: using AI-driven structural predictions, this study discovered how a phage-encoded “Cas12 hacker” hijacks the bacterial host’s thioredoxin enzyme to supercharge its DNA-cleaving ability. www.biorxiv.org/content/10.1...
biorxiv.org
AI-driven discovery of host thioredoxin as a CRISPR enhancer of phage-encoded miniature Cas12 hacker nuclease
The evolutionary arms race between bacteriophages and their bacterial hosts has driven the evolution of sophisticated adaptive immune systems, such as CRISPR-Cas, as a crucial defense mechanism. While...
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Oleg Dmytrenko @olehdmy.bsky.social · 21/01/2025
An excellent review on direct Nanopore sequencing of RNA for detecting epigenetic modifications. We are clearly just at the beginning of this journey, with many exciting discoveries to come. www.sciencedirect.com/science/arti...
sciencedirect.com
Charting the epitranscriptomic landscape across RNA biotypes using native RNA nanopore sequencing
RNA modifications are conserved chemical features found in all domains of life and across diverse RNA biotypes, shaping gene expression profiles and e…
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Institut Pasteur | 130 years of biomedical research @pasteur.fr · 16/01/2025
🧬 Save the date! The EMBO Workshop "The Immune System of Bacteria" will uncover groundbreaking insights into bacterial defense systems. Join us April 8-10, 2025, at Institut Pasteur, Paris. Submit your abstracts by Feb. 28 👉 www.sisb2025.conferences-pasteur.or…
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Oleg Dmytrenko @olehdmy.bsky.social · 16/01/2025
An excellent review on nucleic acid recognition in microbial immunity! www.cell.com/molecular-ce...
cell.com
Nucleic acid recognition during prokaryotic immunity
Prokaryotes sense viral and plasmid nucleic acids to start defense pathways against these invaders. This review examines the different mechanisms of DNA and RNA recognition and how these distinguish s...
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Aude Bernheim @audeber.bsky.social · 09/12/2024
Registration now open for the EMBO Workshop: Immune System of Bacteria !!!! www.sisb2025.conferences-pasteur.org/home Joins us in Institut Pasteur, Paris, April 8-10th.
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Oleg Dmytrenko @olehdmy.bsky.social · 28/11/2024
Happy 🦃 day, everyone!
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Oleg Dmytrenko @olehdmy.bsky.social · 23/11/2024
🕯️
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