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Eran Mukamel

@neurome.bsky.social
159 followers 110 following 58 posts

Neuronal epigenomics. Dad jokes my own.

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Eran Mukamel @neurome.bsky.social · 25/02/2026
The DNA methylome is an incredibly rich signature of cell identity and gene regulation. But what if we're missing half the story? Our new preprint shows that, for neurons, 5-methyl-cytosine (5mC) is only the tip of the methylberg... 🧵
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Eran Mukamel @neurome.bsky.social · 07/11/2025
Exciting to see a package of brain development studies (mainly from mouse) from the NIH (not on bsky!?) #BRAINInitiative . Congrats to the authors, and I'm looking forward to digging into the findings/data. www.nature.com/collections/...
nature.com
BICAN: A cell census of the developing human brain
Building on their landmark efforts to create cell-type atlases of adult brains using single-cell and spatial genomics technologies, researchers in the BRAIN ...
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Eran Mukamel @neurome.bsky.social · 27/10/2025
What do you get when you cross a joke with a rhetorical question?
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Jeremy Berg @jeremymberg.bsky.social · 07/10/2025
I have been trying to get this published as an op-ed, but I am going to post it here since I think it is timely in light of the "consent" extortion events. Deafening Quiet from the Scientific Establishment jeremymberg.github.io/jeremyberg.g... 1/14
jeremymberg.github.io
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Dr. David Miller 🏳️‍🌈 @davidimiller.bsky.social · 01/09/2025
🧪 And House appropriators say: no cuts to NIH budget! House subcommittee version just came out (link below). Holds NIH flat at $48 billion. To be clear: this is far from over. But a good sign that science still matters across both sides of aisle. YOUR VOICE MATTERS!!
appropriations.house.gov
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Eran Mukamel @neurome.bsky.social · 12/08/2025
I always enjoyed visiting DC for neuroscience conferences, but now that they've sent in the storm troopers I'm sure the criminal violations of statistical best practices will finally end
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Eran Mukamel @neurome.bsky.social · 24/07/2025
Can universities go on strike by withholding licensing of all their patents by any US govt agency (incl military)? Seems like the only leverage they have and better than just giving their lunch money to the bullies
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Eran Mukamel @neurome.bsky.social · 14/07/2025
Interesting to see Nature retracting a study based on apparent over-clustering of single cell sequencing data www.thetransmitter.org/cell-types/n...
thetransmitter.org
Nature retracts paper on novel brain cell type
A 2022 paper was retracted after an independent team of researchers reanalyzed the data and questioned its validity.
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The Transmitter @thetransmitter.bsky.social · 02/07/2025
A reanalysis of data published in a 2024 Nature paper highlights a “thorny problem” in genetics research: how to balance curiosity and caution when searching for gene candidates. By Katie Moisse #neuroskyence www.thetransmitter.org/statistics/m...
thetransmitter.org
Memory study sparks debate over statistical methods
The study used data filtering and statistical approaches that can yield spurious findings, but more rigorous methods can result in missed leads.
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Eran Mukamel @neurome.bsky.social · 03/07/2025
Cool work, Marcelo et al!
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Lior Pachter @lpachter.bsky.social · 16/06/2025
I wrote a review of a recent paper on false discovery and multiple testing correction. liorpachter.wordpress.com/2025/06/16/r...
liorpachter.wordpress.com
Reply to: Reply to: False positives in the study of memory-related gene expression
In the Nature paper “Spatial transcriptomics reveal neuron–astrocyte synergy in long-term memory” published on March 14th, 2024, authors Sun et al. claimed to identify cell-type specifi…
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Eran Mukamel @neurome.bsky.social · 12/06/2025
Great to see attention being paid to rigor in neuroscience methods.
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Kamala Harris @kamalaharris.com · 09/06/2025
My statement on what's unfolding in Los Angeles.
A statement from Kamala D. Harris:

Los Angeles is my home. And like so many Americans, I am appalled at what we are witnessing on the streets of our city. Deploying the National Guard is a dangerous escalation meant to provoke chaos. In addition to the recent ICE raids in Southern California and across our nation, it is part of the Trump Administration’s cruel, calculated agenda to spread panic and division.

This Administration’s actions are not about public safety —they’re about stoking fear. Fear of a community demanding dignity and due process.

Protest is a powerful tool — essential in the fight for justice. And as the LAPD, Mayor, and Governor have noted, demonstrations in defense of our immigrant neighbors have been overwhelmingly peaceful.

I continue to support the millions of Americans who are standing up to protect our most fundamental rights and freedoms.
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Michael Totty @mictott.bsky.social · 04/06/2025
Always pseudobulk, always correct for multiple comparisons, and always consult with a biostatistian. www.nature.com/articles/s41...
nature.com
False positives in study of memory-related gene expression - Nature
Nature - False positives in study of memory-related gene expression
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Eran Mukamel @neurome.bsky.social · 04/06/2025
www.nature.com/articles/s41... The engram is still out there, waiting to be rigorously discovered!
nature.com
False positives in study of memory-related gene expression - Nature
Nature - False positives in study of memory-related gene expression
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Eran Mukamel @neurome.bsky.social · 04/06/2025
Very happy to see our comment about scRNAseq methods and rigor finally published. Now more than ever, science must be an example of integrity and self-examination. If we abandon rigor, we will be even more isolated and vulnerable.
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Eran Mukamel @neurome.bsky.social · 23/05/2025
Hard to process the news about Harvard and international students. Other universities should stand in solidarity with our colleagues who are being persecuted.
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Eran Mukamel @neurome.bsky.social · 16/05/2025
Francis Crick speculated that DNA modifications might be key to memory.... but synaptic molecules are specific to individual neural connections
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Eran Mukamel @neurome.bsky.social · 02/05/2025
Genuine question: what will all the talented US and international people who would have gone into science do instead? Real estate?
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Richard Lenski @relenski.bsky.social · 02/05/2025
"A report by economists at American University in Washington DC estimates that a 50% reduction in federal science funding would reduce the US gross domestic product by approximately 7.6%." Science is an amazing engine of economic activity and progress for the US ... or at least it was.
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Eran Mukamel @neurome.bsky.social · 09/04/2025
First they came for the data, and I did not speak out... because I was not data Then they came for the models, and I did not speak... because I was not a model. Then they came for the scientists, and there was no one left to speak for me.
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Eran Mukamel @neurome.bsky.social · 02/04/2025
Science not Silence. (Kudos to the students on my hallway who put these up)
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Eran Mukamel @neurome.bsky.social · 31/03/2025
I signed and urge others to sign as well.
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Eran Mukamel @neurome.bsky.social · 28/02/2025
I'm ashamed of my country
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Eran Mukamel @neurome.bsky.social · 20/02/2025
So who is leading the resistance? We have no time to lose.
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Eran Mukamel @neurome.bsky.social · 11/02/2025
Spent today hearing inspiring and exciting science from fellow members of an NIH Consortium studying HIV and opioid effects on the 🧠. A reminder of what we have to lose if the US abandons our scientific enterprise.
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Eran Mukamel @neurome.bsky.social · 28/01/2025
So when we "buy" Greenland, will we call it Trumpistan? Donaldland? Maganesia? The Panama Canal will be called Trump's Trickle.
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Eran Mukamel @neurome.bsky.social · 17/12/2024
My awesome colleague @seantrott.bsky.social quoted on understanding the nature of our new robot overlords in @nytimes.com www.nytimes.com/2024/12/16/o...
nytimes.com
Opinion | How Does A.I. Think? Here’s One Theory.
It may employ a kind of reasoning humans use all the time — but you’ve probably never heard of it.
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Eran Mukamel @neurome.bsky.social · 16/12/2024
Low tide in La Jolla today
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Eran Mukamel @neurome.bsky.social · 12/12/2024
Calcium imaging of Climbing Fiber complex spikes in mice performing skilled movements... Ahh this brings back fond memories for me :). Very cool.
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Eran Mukamel @neurome.bsky.social · 04/12/2024
What's the best response to bullshit Truth posts? Send a BS (bluesky) about it right here. (Skeet is not doing it for me)
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Eran Mukamel @neurome.bsky.social · 02/12/2024
I used to think the US was a country that valued and invested in science. Not sure how to keep up a brave face and try to inspire/encourage the next generation when we're nominating antiscience quacks to lead NIH.
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Mitch Guttman @mitchguttman.bsky.social · 27/11/2024
Gene regulation involves thousands of proteins that bind DNA, yet comprehensively mapping these is challenging. Our paper in Nature Genetics describes ChIP-DIP, a method for genome-wide mapping of hundreds of DNA-protein interactions in a single experiment. www.nature.com/articles/s41...
nature.com
ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements - Nature Genetics
ChIP-DIP (ChIP done in parallel) is a highly multiplex assay for protein–DNA binding, scalable to hundreds of proteins including modified histones, chromatin regulators and transcription factors, offe...
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Eran Mukamel @neurome.bsky.social · 27/11/2024
Today I learned that the Watson & Crick 1953 paper was not peer reviewed. Editor just published it. Good thing too, because Reviewer 2 would have objected to the small sample size (n=2 helices)
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