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Mycology and Microbiology Center

@myco-microbio.bsky.social
1.1K followers 187 following 31 posts

Mycology and Microbiology Center (MMC) connects researchers working at various research facilities in Estonia. mmc.ut.ee

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Mycology and Microbiology Center @myco-microbio.bsky.social · 28/09/2026
Huge thanks to @kristelpanksep.bsky.social for leading and coordinating this truly global effort from the very beginning! 🙌
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Mycology and Microbiology Center @myco-microbio.bsky.social · 28/09/2026
A particularly exciting milestone: this is the first first-author paper for our PhD student @vprins.bsky.social. Congratulations, Victoria — and everyone who helped make #FunAqua happen! 👏 #eDNA #Biodiversity #ScientificData
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Mycology and Microbiology Center @myco-microbio.bsky.social · 28/09/2026
Eight years and thousands of samples later, results from one of our biggest long-term projects are finally published! 🌍💧🍄 The FunAqua dataset brings together aquatic fungal biodiversity data from 1,452 sites across 87 countries. www.nature.com/articles/s41...
nature.com
The FunAqua dataset of global fungal biodiversity in aquatic ecosystems - Scientific Data
Scientific Data - The FunAqua dataset of global fungal biodiversity in aquatic ecosystems
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Mycology and Microbiology Center @myco-microbio.bsky.social · 09/09/2026
#Eukaryome 2.1 has arrived—download it from the dedicated version page here: eukaryome.org #bioinformatics #taxonomy
eukaryome.org
HOME | EUKARYOME
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Mycology and Microbiology Center @myco-microbio.bsky.social · 08/09/2026
So many unicellular organisms to discover! 🦠🔬 Luckily, describing new ones is nothing new to @adarshhurdeal.bsky.social: his latest paper describes Rozellomyces, a new marine parasite from the Gulf of Alaska.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 08/09/2026
2/2 @tedersoo.bsky.social and @kristelpanksep.bsky.social are excited to put the new system to work. A big thank you to everyone who helped make this possible!
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Mycology and Microbiology Center @myco-microbio.bsky.social · 08/09/2026
1/2 Exciting news from MMC: our new #COPASVision system was installed last week! New equipment brings new possibilities for #MolecularEcology, and we are looking forward to exploring what this platform can offer.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 31/08/2026
At #ICAIS2026 in Belfast, MMC member @kristelpanksep.bsky.social joined the #GuardIAS #eDNA Workshop to discuss moving beyond presence/absence detection and the constraints of applied eDNA. The session ended with a collaborative SWOT analysis on managing aquatic invasive species.
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Edward Wallace @ewjwallace.bsky.social · 19/08/2026
Postdoctoral position available! Help us to understand how fungi cause disease, by bringing data-driven engineering biology and cool fluorescent protein tools into fungal pathogens. Details: ewallace.github.io/news/postdoc... Please share!
ewallace.github.io
Postdoctoral position in fungal engineering biology
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Claudia Martinho @cssmartinho.bsky.social · 24/08/2026
Postdoc opportunity in my group! Please share! 🔁 Investigate the epigenetic mechanisms underlying stress memory in plants 🧬🌱 Looking for someone excited about computational genomics + plant molecular biology. 📍 Dundee, Scotland | 3 years 📅 Apply by 21 Sept www.dundee.ac.uk/work-for-us/...
dundee.ac.uk
Postdoctoral Research Assistant - UOD2369
Closing date: Monday 21 September 2026, 23:59
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Sten Anslan @sanslan.bsky.social · 25/08/2026
The “cattle” beneath our feet, and what it means --> www.openaccessgovernment.org/article/the-...
openaccessgovernment.org
The hidden grazers beneath our feet and soil carbon storage
Researchers explore the overlooked role of belowground grazers and how these tiny organisms contribute to soil carbon storge, ecosystem health and climate regulation
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Michael Raissig @michaelraissig.bsky.social · 07/08/2026
🌾 We're hiring a postdoc! Join the Stomatal Biology group in beautiful Bern @unibe.ch How do grass leaves spatially coordinate development of veins & stomatal rows? 2 years (plus possible extension), funded by @snsf.ch @dfg.de within @cerealcell.bsky.social RU5325 jobs.unibe.ch/job-vacancie...
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Dr. Danny Haelewaters 🏳️‍🌈🍄🪰🦇🔬🧬 @dhaelewa.bsky.social · 18/08/2026
FunDive designed a questionnaire with the goal to better understand motivations behind individuals joining and remaining engaged in #citizenscience projects in #mycology! Please complete it if you are a volunteer or share/forward to individuals who are: docs.google.com/forms/d/e/1F...
docs.google.com
Survey on motivation factors in volunteer mycology projects
Dear Respondent, This questionnaire was designed to investigate the primary reasons why individuals join and remain engaged in citizen science mycology projects. It aims to capture the motivations an...
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Agristok @agristok.bsky.social · 23/08/2026
23 PhD Funded Positions in Agricultural Sciences at the University of Sassari The University of Sassari is offering 23 PhD positions in Agricultural Sciences for the 42nd cycle. The programme focuses on climate-change adaptation, crop productivity and resilience, sustainable agricultural and…
agristok.net
23 PhD Funded Positions in Agricultural Sciences at the University of Sassari
The University of Sassari is offering 23 PhD positions in Agricultural Sciences for the 42nd cycle. The programme focuses on climate-change adaptation, crop productivity and resilience, sustainable agricultural and forestry systems, natural-resource conservation, ecosystem services, and agricultural and agri-food biotechnology. Applications close on 8 September 2026 at 23:59.
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Sten Anslan @sanslan.bsky.social · 08/08/2026
Benchmarking Illumina 2×500, PacBio and Oxford Nanopore for full-length ITS metabarcoding. PacBio performed best overall. More broadly, representative sampling is essential for reliably detecting land-use effects on soil biodiversity! onlinelibrary.wiley.com/doi/10.1111/...
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israelm03.bsky.social @israelm03.bsky.social · 20/08/2026
Our @myco-microbio.bsky.social from University of Tartu had a fantastic time at #ISME20 in Auckland! 🇳🇿 Insightful sessions & so many inspiring new connections. Honored to present my PhD poster & chat with everyone who stopped by! #FungalEcology #PhDLife
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Sten Anslan @sanslan.bsky.social · 27/07/2026
The chitin conundrum: overlooked faunal necromass in soil carbon pools doi.org/10.1016/j.so...
doi.org
Redirecting
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Mycology and Microbiology Center @myco-microbio.bsky.social · 03/06/2026
🌲The forest is connected, but not all substrates are equal from a fungus's perspective. Read more in Meirong Chen et al.'s new paper.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 01/06/2026
Want to learn more about the platforms used during the workshop? ARISE DSI: www.arise-biodiversity.nl PlutoF: plutof.ut.ee #biodiversityinformatics #PlutoF
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Mycology and Microbiology Center @myco-microbio.bsky.social · 01/06/2026
Day 2 of the BMD workshop focused on biodiversity data. Participants explored tools for analysing camera trap and eDNA data, including demonstrations of ARISE DSI and PlutoF. #eDNA #PlutoF #BMDproject
Necessary equipment for eDNA sampling. It includes a set of gloves, sterile tubes and syringes, QR codes for easy data management.Kessy Abarenkov standing in front of a board before her presentation.Kessy Abarenkov shows data management work flow on camera.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 01/06/2026
At the BMD High-throughput Biodiversity Monitoring workshop, participants joined a field excursion to Parc Natural de Sant Llorenç del Munt i l’Obac. @kristelpanksep.bsky.social and Kessy Abarenkov, together with Niels Raes, demonstrated eDNA sampling and camera trap deployment. #eDNA #BMDproject
A group of people standing around a body of water.A woman in a green T-Shirt (Kristel Panksep) is standing on a ledge and telling a group of people standing around her something about eDNA sampling.A photo of a man filming someone in the background.Kristel Panksep took a selfie, with a man taking a photo of Kessy Abarenkov in the background.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 14/05/2026
A little bit more info on the course: natarc.ut.ee/uudised/kurs...
natarc.ut.ee
NATARC
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Mycology and Microbiology Center @myco-microbio.bsky.social · 14/05/2026
eDNA workflow - from sampling to publication to improve biodiversity assessment. This week we had a workflow course at Laelatu Biology Station, see attached photos, held by @kristelpanksep.bsky.social and others. #eDNA #PlutoFGO #bioinformatics #GBIF #biodiversity #NATARC
A man on the left and a woman on the right standing in sea water, collecting samples from the sea.Five people in a circle, kneeling at the edge of the water and filtering a water sample.A female scientist wading deeper into the sea with a bucket in her hand to collect some samplesGroup image of 9 people with greenery in the background.
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Andrew Hipp @andrewlhipp.bsky.social · 22/04/2026
Register today for the next @amsocplanttaxon.bsky.social webinar featuring Dr. Joe Miller (@gbif.org). Dr. Miller will present his talk “GBIF: Data Integration Towards the Extended Specimen” on Friday, May 1 at 12pm ET. And please spread the word! us06web.zoom.us/webinar/regi...
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Mycology and Microbiology Center @myco-microbio.bsky.social · 16/04/2026
A good spring for us — another PhD defended. Congratulations to Dr John Yangyuoru Kupagme, whose work explored the hidden diversity of African fungi 🍄
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Mycology and Microbiology Center @myco-microbio.bsky.social · 10/04/2026
Last week, our member @irynaya.bsky.social opened a photo exhibition at Kreutzwaldi 5, showcasing the usually invisible world of myxomycetes. Once thought to be fungi, these organisms go through remarkable life stages—some now visible at the exhibition! www.emu.ee/uudised/foto... #myxomycetes
emu.ee
Fotonäitusel saab tutvuda salapäraste limakutega
Eesti Maaülikoolis avatakse fotonäitus „Imelised limakud“, mis tutvustab vähetuntud, kuid lummavat osa elurikkusest – organisme, kes ei kuulu ei taimede, loomade ega seente hulka.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 09/04/2026
And if you have questions or just want to say congrats, John is here: @jkupagme.bsky.social
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Mycology and Microbiology Center @myco-microbio.bsky.social · 09/04/2026
Next week (!), John will defend his PhD thesis on the still underexplored fungi of African soils. His work maps fungal diversity across 32 countries—showing just how much we still don’t know about these communities. #mycorrhizae #fungaldiversity
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New Phytologist @newphyt.bsky.social · 01/04/2026
📢 We're delighted to announce the topic of the 2026 New Phytologist Editor-in-Chief symposium is 'Collections through time: legacy and innovation'. 📅 3 July 2026 📍 Oecologicum, University of Tartu, Estonia 👉 www.newphytologist.org/events/eics-... 🧵1/5
newphytologist.org
Collections through time: legacy and innovation
Our annual New Phytologist Editor-in-Chief Symposium will be held on Friday, 3 July 2026, at the University of Tartu, home institution of New Phytologist’s Editor-in-Chief Maarja Öpik.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 01/04/2026
Have you ever wondered how we describe species we’ve never actually seen? Our latest video breaks this down—have a look! youtu.be/Ffk8m4XRT2U?... #eDNA #taxonomy
youtu.be
Guidelines for eDNA-based description of new species to genera to phyla
YouTube video by Mycology & Microbiology Center
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Mycology and Microbiology Center @myco-microbio.bsky.social · 24/03/2026
Is this seminar recorded, meaning can we watch at another time as well? For our members in Estonia, it is a very unfortunate timing of 3 AM...
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Mycology and Microbiology Center @myco-microbio.bsky.social · 24/03/2026
New publications are springing up rapidly among our PhD students — like fungi after rain! Nice work — and ironically, this time it's all about the desert mycobiome! Who would’ve thought our publication “rainfall” comes from a desert? 😄
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Adam Frew @frewecologist.bsky.social · 23/03/2026
Postdoc (2 years) in mycorrhizal fungal biogeography & species distribution modelling @umeaplantsciencecentre.se Work with large-scale metabarcoding data and modelling. Deadline is 30th April www.umu.se/en/work-with...
umu.se
Postdoctoral scholarship (2 years) in mycorrhizal biogeography and species distribution modelling
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Ibtissem Ben Fekih @ibtissemfekih.bsky.social · 12/03/2026
📣 🍄🐝The AFA workshop “Arthropod–Fungal Associations: From Parasites to Pathogens” is now traveling to Poland for its 3rd edition! 😊 📅 May 20–22, 2026 📍 Łódź & Spała, Poland 📝 Register by April 10th! Come and join us !! 🍄🐝🐛🐜 #Mycology #Entomology #insectpathology #Parasites #ScientificCommunity
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Mycology and Microbiology Center @myco-microbio.bsky.social · 13/03/2026
Nice progress — one of our members has just published her first paper on her PhD journey. The study shows how different soil sampling designs can dramatically change biodiversity estimates across animals, bacteria, and fungi. 🐀🦠🍄🧬
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Mycology and Microbiology Center @myco-microbio.bsky.social · 19/02/2026
Alert: a freshly minted doctor just passed all quality filters! 🎓 Zero chimeras detected, PhD successfully validated. Heartfelt congratulations from all of us at MMC! 💐🧬
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Agristok @agristok.bsky.social · 05/02/2026
Postdoctoral Position in Forest Diversity, Biodemography, and Global Change at WSL (2026) WSL Switzerland is hiring a Postdoctoral researcher in forest diversity and biodemography to study climate-driven changes in global forest ecosystems. Two-year position with extension option.
agristok.net
Postdoctoral Position in Forest Diversity, Biodemography, and Global Change at WSL (2026)
WSL Switzerland is hiring a Postdoctoral researcher in forest diversity and biodemography to study climate-driven changes in global forest ecosystems. Two-year position with extension option.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 17/12/2025
It sounds very interesting! Due to the time difference, it will be 5 AM for us. Would you mind sharing, if the speaker has given their permission for the video to remain on your YT channel for longer so we could watch it at a different time?
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Agristok @agristok.bsky.social · 15/12/2025
4 PhD Fully Funded Positions in Environmental Research at UFZ, Germany The Helmholtz Centre for Environmental Research (UFZ) is offering four fully funded PhD positions within the new PSOL PhD College, focusing on innovative solutions for PFAS removal across governance, biology, stormwater…
agristok.net
4 PhD Fully Funded Positions in Environmental Research at UFZ, Germany
The Helmholtz Centre for Environmental Research (UFZ) is offering four fully funded PhD positions within the new PSOL PhD College, focusing on innovative solutions for PFAS removal across governance, biology, stormwater systems, and remediation technologies. Apply by 16 January 2026.
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Ali Hakimzadeh @bioinfo94.bsky.social · 05/12/2025
🧬 Long-read metabarcoding is powerful, but chimera filters can trash good reads. Our new study benchmarks three algorithms on full-length ITS and shows how false positives distort results. 🔗 peerj.com/articles/204... #Metabarcoding #LongRead #Bioinformatics #Chimeras
peerj.com
Are we throwing away good data? Evaluation of chimera detection algorithms on long-read amplicons reveals high false-positive rates across algorithms
Long-read amplicon sequencing has enabled us to return to full-length DNA barcodes, which benefit from the higher taxonomic resolution in metabarcoding-based biodiversity studies. However, chimeric se...
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Leho Tedersoo @tedersoo.bsky.social · 20/10/2025
Fungal phylum-level classification update now available! Used "innovative taxonomy" to describe >100 taxa, from species to phylum, based on long reads, characteristic nucleotides and env-samples. mycokeys.pensoft.net/article/1616... #fungi #taxonomy #PacBio #classification #eDNA
New fungal phylum-level system, with red font indicating novel taxa and size taxonomic diversity.
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FUNACTION @funaction.bsky.social · 15/10/2025
📢Are you attending the Living Data 2025 next week? @isabelrfernandes.bsky.social will present the preliminary results from #FUNACTION. www.livingdata2025.com/program.html... Find her during the week if you want to know more about our project and activities to conserve #aquaticfungi.
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Roey Angel @roeyangel.bsky.social · 13/10/2025
📣 New PhD student position opening in my lab! Soils are full of microbes, but how many are active? Surprisingly, we still lack reliable methods to answer this. If you are interested in microbial dormancy and are fascinated by the Alps and glacier forefields, contact me. 🏔️ 🦠 💤 🧬 🎓
The team at our research site in the alps
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Mycology and Microbiology Center @myco-microbio.bsky.social · 14/10/2025
🧬 New at Eukaryome: the Online Sequence Identification Tool is now live! Submit sequences directly on the site and get instant taxonomic identification — no downloads needed. Come find us at eukaryome.org #eukaryome #bioinformatics #taxonomy
eukaryome.org
HOME | EUKARYOME
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Mycology and Microbiology Center @myco-microbio.bsky.social · 23/09/2025
Proud moment for MMC: a member presenting her work to the world 🌟🧬
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Society for the Protection of Underground Networks (SPUN) @spun.earth · 23/07/2025
Who lives underground? Find out now in our new paper published in @nature.com. Key finding: 90% of predicted mycorrhizal biodiversity hotspots lie outside protected areas. Read here: buff.ly/WmDqAP3 🧵
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Agristok @agristok.bsky.social · 05/08/2025
PhD Funded Position in Computational Microbial Biotechnology at CNB Madrid, Spain Apply for a fully funded PhD position in computational microbial biotechnology at CNB Madrid. Join the AMBIZIONE project and contribute to cutting-edge research in synthetic microbial communities.
agristok.net
PhD Funded Position in Computational Microbial Biotechnology at CNB Madrid, Spain
Apply for a fully funded PhD position in computational microbial biotechnology at CNB Madrid. Join the AMBIZIONE project and contribute to cutting-edge research in synthetic microbial communities.
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Mycology and Microbiology Center @myco-microbio.bsky.social · 18/06/2025
Read more from here: ERC grant will support placement of tens of thousands of previously unknown fungi on evolutionary tree ut.ee/en/news/erc-...
ut.ee
ERC grant will support placement of tens of thousands of previously unknown fungi on evolutionary tree
Leho Tedersoo, Professor of Mycorrhizal Studies at the University of Tartu, has received the Advanced Grant from the European Research Council to systematise and describe members of the 95% majority o...
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Mycology and Microbiology Center @myco-microbio.bsky.social · 18/06/2025
We’re thrilled to share that @tedersoo.bsky.social has secured an ERC Advanced Grant! 🎉 One of Europe’s top research honors—huge congratulations from all of us at Mycology and Microbiology Center! 🙌 #ERCGrant #AcademicExcellence
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Kadri Runnel @kadrirunnel.bsky.social · 12/06/2025
Yesterday, we had the chance to present our proposal to the Estonian Environmental Board and Climate Ministry: 29 more fungal species for protection, in addition to the ~40 already listed. My favorite: Rigidoporus crocatus—locally common in wet alder forests, globally rare. Our responsibility!
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