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MS Lee Lab

@msleelab.bsky.social
48 followers 57 following 10 posts

A research group interested in proteomics, peptidomics, and PTMomics in neuro-diseases📍TU_Muenchen | CLINSPECT-M consortium | opinions are my own (Chien-Yun)

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MS Lee Lab @msleelab.bsky.social · 02/09/2026
Happy to share that our work is published by @natcomms.nature.com! We built this lysate-based substrate atlas to give the community a baseline framework for understanding PAD isozyme selectivity and designing better probes. #PADenzymes #citrullination #proteomics #massspec
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MS Lee Lab @msleelab.bsky.social · 30/03/2026
Not the most obvious project for a mass spec lab...but here we are, making antibodies.😀 Our new paper reports two motif-based mAbs that broadly detect citrullination, distinguish it from homocitrullination, and work in ELISA, WB, and IF. www.cell.com/cell-reports... #citrullination #antibodies #PTM
cell.com
Development of motif-specific monoclonal antibodies for global protein citrullination detection with minimal cross-reactivity to homocitrullination
Laposchan et al. report a motif-based strategy to generate monoclonal antibodies for global detection of protein citrullination. The antibodies show strong sensitivity and selectivity over homocitrull...
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Reposted by MS Lee Lab
PastelBio @pastelbio.bsky.social · 22/02/2026
High-throughput chemical proteomics workflow for profiling protein citrullination dynamics www.nature.com/artic... --- #proteomics #prot-paper
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MS Lee Lab @msleelab.bsky.social · 23/02/2026
Our proteomics workflow for profiling citrullination dynamics is out 🎉 www.nature.com/articles/s41... Idea from a journal club discussion + Funding + Determined PhD student + many “this didn’t work…” moments = A robust, accessible citrullinome enrichment workflow #proteomics #citrullination #PTM
nature.com
High-throughput chemical proteomics workflow for profiling protein citrullination dynamics - Nature Communications
Protein citrullination is linked to autoimmunity and inflammation but is challenging to detect globally. Here, the authors report a high-throughput chemical proteomics workflow and demonstrate its uti...
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MS Lee Lab @msleelab.bsky.social · 11/11/2025
Hello Toronto! 🇨🇦 The terrific TUM team is on fire today at #HUPO2025! Don’t miss our postdoc Andreas presenting his peptidome study on 2,000+ plasma samples with unprecedented depth and robustness — catch him at poster session PV.02.065! #peptidome #proteomics #TUM #HUPO2025 #TTTT
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Reposted by MS Lee Lab
Kusterlab @kusterlab.bsky.social · 20/10/2025
Our new review paper about Pathway-Centric PTM Data Analysis is out this week in #Proteomics! We cover databases, enrichment tools, software for pathway reconstruction, and full-fledged platforms that help to interpret high-throughput PTM datasets. Check it out here: doi.org/10.1002/pmic...
doi.org
Computational Approaches for Pathway‐Centric Analysis of Protein Post‐Translational Modifications
Protein function is dynamically modulated by post-translational modifications (PTMs). Many different types of PTMs can nowadays be identified and quantified at a large scale using mass spectrometry. ...
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MS Lee Lab @msleelab.bsky.social · 28/04/2025
Another new preprint is out — with it, a proteome-wide solution to study citrullination at scale! www.biorxiv.org/content/10.1... If you’ve been following our journey into one of the trickiest PTMs (citrullination), you might be thinking... what about enrichment before MS?
biorxiv.org
High-throughput chemical proteomics workflow for profiling protein citrullination dynamics
Citrullination is a post-translational modification implicated in autoimmune and inflammatory diseases, yet its low abundance and lack of effective enrichment tools have limited proteome-wide analysis...
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MS Lee Lab @msleelab.bsky.social · 31/03/2025
New preprint! 🎉 www.biorxiv.org/content/10.1... If you've ever tried detecting citrullinated proteins, you know the pain—most pan-citrullination antibodies are either useless, cross-reactive, or heartbreakingly bad. 💔😭 I tested them. I suffered. I cried. So we made our own.
biorxiv.org
Development of Motif-Specific Monoclonal Antibodies for Global Protein Citrullination Detection with Minimal Cross-Reactivity to Homocitrullination
Protein citrullination, a post-translational modification (PTM) catalyzed by peptidylarginine deiminases (PADs), plays critical roles in biological processes such as immunity, gene regulation, and inf...
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Reposted by MS Lee Lab
Kusterlab @kusterlab.bsky.social · 04/03/2025
🚀 Exciting news from our lab! Our latest paper has been featured on the cover of @molsystbiol.org - "Gemcitabine and ATR inhibitors synergize to kill PDAC cells by blocking DNA damage response" by Höfer et al.! 🧬🎉 doi.org/10.1038/s44320-025-00085-6 (1/4)
doi.org
Gemcitabine and ATR inhibitors synergize to kill PDAC cells by blocking DNA damage response | Molecular Systems Biology
imageimagePhosphoproteomics unveils the mode of action of clinical ATR inhibitors and explains their synergy with Gemcitabine in pancreatic cancer cells. Viability screening of 146 targeted drugs ide...
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Reposted by MS Lee Lab
Kusterlab @kusterlab.bsky.social · 10/01/2025
🎉 We're happy to announce that our latest project was published in @naturecomms.bsky.social this week: PTMNavigator, a #bioinformatics web platform for in-depth analysis of post-translational modification (PTM) perturbation datasets. 📄 doi.org/10.1038/s414... (1/6)
doi.org
PTMNavigator: interactive visualization of differentially regulated post-translational modifications in cellular signaling pathways - Nature Communications
Post-translational modifications are important regulators of cellular pathways, but our understanding of these processes is limited. Here, the authors present a web tool that integrates various databa...
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MS Lee Lab @msleelab.bsky.social · 06/02/2025
Kicking off the new year strong! Prosit-Cit is officially online!🍻 Check it out: www.mcponline.org/article/S153... #DeepLearning #Citrullination #Bioinformatics
mcponline.org
Deep Learning Enhances Precision of Citrullination Identification in Human and Plant Tissue Proteomes
Citrullination is a critical yet understudied post-translational modification (PTM) implicated in various biological processes. Exploring its role in health and disease requires a comprehensive unders...
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