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Jacob Baker

@microjacob.bsky.social

71 followers 62 following 18 posts

Figures or it didn't happen.

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Reposted by Jacob Baker

Tami Lieberman @contaminatedsci.bsky.social · 30/06/2025

Our paper demonstrating that within-species warfare interactions are ecologically important on human skin is now published in Nature Micro! www.nature.com/articles/s41...

nature.com

Intraspecies warfare restricts strain coexistence in human skin microbiomes - Nature Microbiology

About 15,000 pairwise interactions within S. epidermidis from 18 people in 6 families reveal the antagonism and molecular trade-offs that shape the skin microbiota.

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Jacob Baker @microjacob.bsky.social · 04/04/2025

Taxa is hiring! We're looking for a Computational Biologist to spearhead the analysis of massive genomic datasets for our flagship probiotics. Exciting science, great team, and transparent compensation. Apply here 👇

linkedin.com

Taxa hiring Computational Biologist in San Francisco, CA | LinkedIn

Posted 4:13:15 PM. The OpportunityWe are looking for a talented Computational Biologist to spearhead the analysis of…See this and similar jobs on LinkedIn.

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Reposted by Jacob Baker

Evan Qu @quevan.bsky.social · 11/02/2025

PHLAME is available to try out on GitHub: github.com/quevan/phlame

github.com

GitHub - quevan/phlame

Contribute to quevan/phlame development by creating an account on GitHub.

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Reposted by Jacob Baker

Evan Qu @quevan.bsky.social · 11/02/2025

Excited to share my preprint describing a new microbiome analysis method, PHLAME, for detecting strain-level associations in difficult sample types. 🧵 www.biorxiv.org/content/10.1... This work was done with my great coauthors and my amazing advisor @contaminatedsci.bsky.social

biorxiv.org

Intraspecies associations from strain-rich metagenome samples

Genetically distinct strains of a species can vary widely in phenotype, reducing the utility of species-resolved microbiome measurements for detecting associations with health or disease. While metage...

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Jacob Baker @microjacob.bsky.social · 11/01/2024

Ever wondered about the origin of the bacteria that call our faces home? 🤔 Our new preprint dives into the fascinating dynamics of the human facial skin microbiome (FSM) and explores the natural history of important microbiome species on people at high resolution. 🧫🧵

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