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Martin Weigert

@maweigert.bsky.social
1.1K followers 267 following 18 posts

Machine Learning for Microscopy | Prof @ TU Dresden | scholar.google.com/citations?user=Z…

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Martin Weigert @maweigert.bsky.social · 02/03/2026
For pretraining we use multi-resolution MAE: we mask tokens across scales and reconstruct each level from the others (cross-scale inpainting). This yields strong, scale-consistent representations and speeds up downstream training, and lets us leverage large unlabeled microscopy datasets.
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Martin Weigert @maweigert.bsky.social · 02/03/2026
Modern microscopy produces GB images with multi-scale features (cells > tissue > anatomy), yet most models use single res FOV. MuViT jointly encodes multiple physical regions in one transformer with world-coordinate RoPE for coherent cross-scale attention, ie it "sees" local + global context at once
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Martin Weigert @maweigert.bsky.social · 02/03/2026
Excited to share our new paper (CVPR 2026 🚀): "MuViT: Multi-Resolution Vision Transformers for Learning Across Scales in Microscopy" which enables local predictions to use global context. Great work led by @albertdm.bsky.social & another fun collab w @gioelelamanno.bsky.social! @scadsai.bsky.social
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Martin Weigert @maweigert.bsky.social · 06/06/2025
Out today in @natmethods.nature.com : Spotiflow, our transcript localization method for imaging-based spatial transcriptomics. Led by amazing PhD student @albertdm.bsky.social, joint work w @gioelelamanno.bsky.social at EPFL / @scadsai.bsky.social www.nature.com/articles/s41... rdcu.be/epIB7
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Martin Weigert @maweigert.bsky.social · 17/02/2025
Great to be back at @embl.org for our Advanced Deep learning course for image analysis #EMBLDeeplearning. Lots of cool projects, lots of ground to cover, looking forward to the week!
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