Reposted by Lukas ForerRetro Game Cartridges @retro-cartridges.bsky.social · 31/01/2026Do you remember this Prince of Persia version? 🎮 Prince of Persia 🕹 NES (PAL) 📅 1992 💡 A simplified but very playable console adaptation 👑 Prince of Persia cartridges every Saturday #PoPSaturday 031
Lukas Forer @lukfor.bsky.social · 25/01/2026Over the years, my Game Boy cartridge collection quietly grew to around 100 pieces. Last week, I decided to turn it into a small nostalgia project. One cartridge per day. 030
Lukas Forer @lukfor.bsky.social · 25/10/2025After a long journey, our nf-test paper is officially out! 🚀 doi.org/10.1093/giga...doi.orgImproving the Reliability, Quality and Maintainability of Bioinformatics Pipelines with nf-testAbstract. The workflow management system Nextflow, together with the nf-core community, has established an essential ecosystem in bioinformatics. However, 061
Reposted by Lukas ForerCameron Patrick @cameronpat.bsky.social · 04/10/2025This is how I integrate Quarto and Zotero with minimal suffering (long rambling post, scroll down to the section on bibliography or search for Zotero): cameronpatrick.com/post/2023/07...cameronpatrick.comCameron Patrick - Some Quarto PDF formatting tips, with particular reference to thesis writingI’ve just spent most of a day faffing around trying to get Quarto to produce a nice PDF file that I like the look of and which meets my university’s formatting requirements for a PhD thesis. Maybe my ... 095
Reposted by Lukas ForerRobert Petit @rpetit3.bsky.social · 26/08/2025Another Bactopia update! I think the plugin is completed now! I've also started the transition from pytest to nf-test (from @lukfor.bsky.social and @sebschoenherr.bsky.social). So far nf-test has been great to work with! Haha probably should have made the transition a long time ago! 041
Lukas Forer @lukfor.bsky.social · 31/07/2025:) 🌍 Südtirol-Raten Nr. 358471 Versuch 1: 📍 - jrkager.github.io?game=358471jrkager.github.ioSüdtirol-Raten 010
Lukas Forer @lukfor.bsky.social · 29/07/2025Sehr cool 💪 🌍 Südtirol-Raten vom 29.7.2025 Versuch 1: 16 km Versuch 2: 6 km Versuch 3: 📍 - jrkager.github.iojrkager.github.ioSüdtirol-Raten 010
Lukas Forer @lukfor.bsky.social · 28/07/2025Ja. Ich verstehe was du meinst. Bei der Tageschallenge macht es so definitiv mehr Spaß. Eventuell, dass man es beim zufallsmodus optional einstellen kann? Jedenfalls hatte ich gestern viel Spaß damit, danke ✌️ 010
Lukas Forer @lukfor.bsky.social · 28/07/2025Macht Spaß 👍 wäre es event. sinnvoller, die beiden Hinweisorte in unterschiedliche Richtungen/Quadranten zu legen? Beim heutigen Rätsel zeigen beide in die gleiche Himmelsrichtung. der zweite liefert imho kaum zusätzliche Infos. Ein Ort in einer anderen Richtung wäre vielleicht hilfreicher. 100
Reposted by Lukas ForerJohannes Kager @johk.bsky.social · 27/07/2025Here you go! #ciddle #südtirol jrkager.github.iojrkager.github.ioSüdtirol-Raten 693
Reposted by Lukas ForerCristian Pattaro @cpattaro.bsky.social · 13/06/2025As a post-GWAS analysis, ever thought about automatic haplotype testing @ each locus + test vs any number of traits? 👏 Amazing @dariushghasemi.bsky.social just released #Haplomics, a #Snakemake pipeline walking u all the way down to summary stats+clustering www.medrxiv.org/content/10.1... #statgenmedrxiv.orgHaplomics: A Snakemake pipeline for haplotype-based association analysis in multi-omics studiesSummary Genome-wide association studies (GWAS) generated thousands of loci associated with complex traits and diseases. However, to characterize of the pleiotropic, molecular and population genetic bo... 165
Lukas Forer @lukfor.bsky.social · 17/04/2025Really cool that the latest VSCode extension for Nextflow shows nf-test test coverage! 🚀 022
Reposted by Lukas ForerHumangenom Austria @humangenomaustria.bsky.social · 13/03/2025𝐇𝐮𝐦𝐚𝐧𝐠𝐞𝐧𝐨𝐦 𝐀𝐮𝐬𝐭𝐫𝐢𝐚 ist jetzt auf Bluesky! Das österreichische Humangenomprojekt ist eine Initiative für 𝐝𝐢𝐞 𝐈𝐧𝐭𝐞𝐠𝐫𝐚𝐭𝐢𝐨𝐧 𝐠𝐞𝐧𝐞𝐭𝐢𝐬𝐜𝐡𝐞𝐫 𝐮𝐧𝐝 𝐠𝐞𝐧𝐨𝐦𝐢𝐬𝐜𝐡𝐞𝐫 𝐃𝐚𝐭𝐞𝐧 𝐢𝐧 𝐌𝐞𝐝𝐢𝐳𝐢𝐧 𝐮𝐧𝐝 𝐖𝐢𝐬𝐬𝐞𝐧𝐬𝐜𝐡𝐚𝐟𝐭 in ganz Österreich. Infos ➡️ www.humangenom.at #Genetik #Genetics #Health #Genomics #GenomeOfEurope 021
Reposted by Lukas ForerAzin Kheirkhah @azinkh.bsky.social · 06/03/2025What a fantastic talk given by Prof. Michael Moor. Thanks to the Faculty of AI and Scientific Computing in Medicine for organizing such an important event. @i-med.ac.at @sebschoenherr.bsky.social @lukfor.bsky.social #MedSky 053
Reposted by Lukas ForerJohannes Klingebiel @klingebeil.bsky.social · 23/02/2025“Infinite code = infinite maintenance” leaddev.com/software-qua...leaddev.comHow AI generated code compounds technical debtGitClear’s latest report exposes rising code duplication and declining quality as AI coding tools gain in popularity. 0103
Reposted by Lukas ForerAzin Kheirkhah @azinkh.bsky.social · 18/02/2025🎙️ #Atherotalk Episode 7 is live, don’t miss it! I had the chance to interview my mentor, Prof. Kronenberg. @i-med.ac.at @aspcardio.bsky.social @katioorni.bsky.social #MedSky #CardioSky #Lpa #FH #Podcast 🎧Spotify: open.spotify.com/episode/26Me... 0106
Lukas Forer @lukfor.bsky.social · 15/02/2025After the millennium, I started with Delphi and made a SameGame clone—then became obsessed with card games! 🎴 I shared my games in forums and was super happy that people actually played them. 050
Lukas Forer @lukfor.bsky.social · 15/02/2025Just found my first real game on some old floppy discs from around 1999: a Mastermind clone written in QBasic. I remember being super happy and proud because it was the first project I actually finished instead of stopping halfway to start another idea. 👨🏻💻 170
Reposted by Lukas ForerGregor Sturm @grst.bsky.social · 05/02/2025I'd like to share DSO, a command line helper to build reproducible data science projects with ease. It is an opinionated way to organize data science projects, built around data version control (DVC). github.com/Boehringer-I...github.comGitHub - Boehringer-Ingelheim/dso: Data Science Operations (dso) command line toolData Science Operations (dso) command line tool. Contribute to Boehringer-Ingelheim/dso development by creating an account on GitHub. 1124
Lukas Forer @lukfor.bsky.social · 01/02/2025We had an amazing time at the 2-day Hackathon at @i-med.ac.at ! Can't wait for the next one! 🚀 080
Reposted by Lukas ForerSilvia Di Maio @silvidm.bsky.social · 29/01/2025Our Nextflow in Genomics workshop kicks off tomorrow! Excited to dive into imputation with @sebschoenherr.bsky.social and @lukfor.bsky.social #nf-genomics #freeimputation 082
Lukas Forer @lukfor.bsky.social · 29/01/2025Looking forward to great discussions, learning, and sharing insights. Busy but productive days ahead! 010
Lukas Forer @lukfor.bsky.social · 22/01/2025I learned the hard way today: SimpleDateFormat in Java is NOT thread-safe! #java 150
Reposted by Lukas ForerPhil Ewels @ewels.bsky.social · 22/01/2025Yes, but can it run Doom? `nextflow run doom` ✅ @nextflow.io (by @jordeu.bsky.social 🌟) github.com/nextflow-io/... 24411
Lukas Forer @lukfor.bsky.social · 20/01/2025Für die #Geoguessr Spieler unter uns: eine Map mit ca. 9.900 locations aus #Südtirol. Viel Spaß! 📍 www.geoguessr.com/maps/678e0b0...geoguessr.comGeoGuessr - SüdtirolExplore this map by lukfor on GeoGuessr 030
Lukas Forer @lukfor.bsky.social · 16/01/2025Looking forward to spending two days working on the imputation server with fantastic people! Thanks to @seqera.io, @ewels.bsky.social and @chrishakk.bsky.social for sending us stickers 🙏 030
Reposted by Lukas ForerSeth Stadick @ducktapeprogrammer.bsky.social · 10/01/2025For anyone who hasn’t already read the article, this is a pretty great video from Prime on it. curiouscoding.nl/posts/static...curiouscoding.nlStatic search trees: 40x faster than binary searchTable of Contents 1 Introduction 1.1 Problem statement 1.2 Motivation 1.3 Recommended reading 1.4 Binary search and Eytzinger layout 1.5 Hugepages 1.6 A note on benchmarking 1.7 Cache lines 1.8 S-tree... 0113
Lukas Forer @lukfor.bsky.social · 30/12/20248/ 🙏 Thanks to all contributors and community members for making nf-test better! It's wonderful to work with such a positive and motivated open source community. Check out www.nf-test.com, don’t forget to leave a star ⭐ on the GitHub repo! Make @nextflow.io pipeline testing smarter, not harder! 🚀 040
Lukas Forer @lukfor.bsky.social · 30/12/20247/ 🔮 New features are coming in 2025! we plan to introduce caching, cloud-native testing, Conda environment support and improved snapshots. 120
Lukas Forer @lukfor.bsky.social · 30/12/2024 6/ 💡 Smart testing made CI/CD pipelines more efficient by identifying the minimal set of tests required for each change. This dependency-based approach significantly reduced costs by avoiding unnecessary test runs. 100
Lukas Forer @lukfor.bsky.social · 30/12/20245/ 🏃🏻♂️ Execution times were drastically reduced thanks to parallelization through Test List Sharding. This feature allows tests to run across multiple machines, improving runtime. 100
Lukas Forer @lukfor.bsky.social · 30/12/20244/ 🧩 Custom plugins enabled exciting extensions, including support for new file formats (FASTA, VCF, BAM) and additional utility functions. @sebschoenherr.bsky.social, @nf-co.re, @maxulysse.github.io, Nicolas Vannieuwkerke 100
Lukas Forer @lukfor.bsky.social · 30/12/20243/ 📝 The preprint was released, describing the features and capabilities of nf-test. www.biorxiv.org/content/10.1...biorxiv.orgImproving the Reliability and Quality of Nextflow Pipelines with nf-testThe workflow management system Nextflow builds together with the nf-core community an essential ecosystem in Bioinformatics. However, ensuring the correctness and reliability of large and complex pipe... 100
Lukas Forer @lukfor.bsky.social · 30/12/20242/ 🙌 Community contributions were phenomenal this year! From creating valuable resources to sharing knowledge, the community made a huge impact. 100
Lukas Forer @lukfor.bsky.social · 30/12/20241/ 🚀 nf-test is now the standard testing framework of @nf-co.re 110
Lukas Forer @lukfor.bsky.social · 30/12/20242024 is ending soon and it has been an exciting year for nf-test 🎉 A lot of new features and the amazing @nextflow.io community made nf-test even better 🚀 Thank you! 🙏 💡 What was your favorite nf-test update this year? #Nextflow #Bioinformatics #recap Here's a quick look back at 2024 🧵👇 151
Lukas Forer @lukfor.bsky.social · 22/12/2024Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social 094
Reposted by Lukas ForerAzin Kheirkhah @azinkh.bsky.social · 13/12/2024If you're looking to connect with other researchers and physicians in the cardiovascular field, join this Starter Pack. #CardioSky #MedSky #GeneSky #ImmunoSky go.bsky.app/VEqq8ML 063
Lukas Forer @lukfor.bsky.social · 10/12/2024nice, found it. thank you for the Christmas puzzle :) 010
Lukas Forer @lukfor.bsky.social · 05/12/2024Don't forget to open the door number 5 of the Nextflow Advent Calendar! 😍 141