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Kyohei Kuroda

@kuroda-kyohei.bsky.social
16 followers 29 following 6 posts

Microbial Ecology/Environmental microbiology/Biological wastewater treatment

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Reposted by Kyohei Kuroda
Hiro Imachi @hiro-imachi.bsky.social · 17/09/2026
An interview article has been published in Nature. It focuses on the cultivation of Asgard archaea (formally, the phylum Promethearchaeota). www.nature.com/articles/d41...
nature.com
These bizarre, much-coveted microbes are revealing the origins of complex life
Researchers are racing to culture a menagerie of exotic organisms and finding lots of surprises along the way.
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Kyohei Kuroda @kuroda-kyohei.bsky.social · 08/07/2026
プレスリリース:戦略17分野にも取り上げられているバイオものづくりプロセスから排出される廃棄物と廃水について、一括で処理してエネルギー回収も可能な装置「ABCS-R」を開発しました! バイオものづくり由来の廃棄物と廃水をまとめて処理してエネルギー回収 www.aist.go.jp/aist_j/press...
aist.go.jp
産総研:バイオものづくり由来の廃棄物と廃水をまとめて処理してエネルギー回収
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Reposted by Kyohei Kuroda
Masaru Nobu @masarunobu.bsky.social · 23/06/2026
Parasitic bacteria feeding on their hosts’ RNA!? New cultures and Patescibacteriota/Minisyncoccota/CPR continue to surprise us… www.biorxiv.org/content/10.6...
biorxiv.org
A representative of a ubiquitous bacterial lineage parasitically feeds on host RNA
Cellular metabolism is widely understood as an integrated network of redox reactions, energy conservation, and biosynthetic pathways. Here we show that across diverse prokaryotic lineages, loss of red...
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Reposted by Kyohei Kuroda
BejaLabTechnion @bejalab.bsky.social · 20/05/2026
we got the cover!!! Novel light-driven schizorhodopsins from Antarctic Minisyncoccota (Patescibacteria) and cyanobacteria www.sciencedirect.com/science/arti...
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Reposted by Kyohei Kuroda
Evgenii Protasov @evgenii-protasov.bsky.social · 12/05/2026
Rare event, but it happens: a proposal of a new bacterial class, Nanosynbacteria within the Minisyncoccota phylum (aka Patescibacteriota or Candidate Phyla Radiation). #microbiology #bacteria #parasites #taxonomy #MicroSky @microbiologysociety.org www.microbiologyresearch.org/content/jour...
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Kyohei Kuroda @kuroda-kyohei.bsky.social · 11/05/2026
Very happy to share our review on the taxonomy and ecology of phylum Minisyncoccota. A great collaboration with Prof. Kindaichi and Dr. Fujii! Current Understanding of Taxonomy and Ecology of the Phylum Minisyncoccota doi.org/10.1264/jsme...
doi.org
Current Understanding of Taxonomy and Ecology of the Phylum Minisyncoccota
The phylum Minisyncoccota (formerly known as “Candidatus Patescibacteria”/candidate phyla radiation [CPR] and designated under SeqCode as Patescibacte …
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Reposted by Kyohei Kuroda
Microbiology Society @microbiologysociety.org · 31/12/2025
Goodbye 2025, hello 2026!🦠 As the year comes to a close, here's all of the incredible microbes that were discovered this year and featured as our Microbe of the Month. We're so glad to see you all enjoying this series as much as we do, and we hope you're as excited to see what 2026 has in store🔬🔎
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Kyohei Kuroda @kuroda-kyohei.bsky.social · 09/11/2025
Our work on Ca. Saccharimonadia bacteria is now published in Environmental Microbiology Reports led by S. Kagemasa! Metabolic Potential of Candidatus Saccharimonadia Including Rare Lineages in Activated Sludge enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
enviromicro-journals.onlinelibrary.wiley.com
Metabolic Potential of Candidatus Saccharimonadia Including Rare Lineages in Activated Sludge
Candidatus Saccharimonadia is ubiquitously found in activated sludge processes, but its ecophysiological characteristics remain poorly understood. Metagenome analysis of Ca. Saccharimonadia in size-f....
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Reposted by Kyohei Kuroda
Hiro Imachi @hiro-imachi.bsky.social · 17/09/2025
Wow, our AEM paper on a new methane-oxidizing bacterium just got a Commentary! 🎉 Congrats Kambara-san—so happy to see the work getting recognized! journals.asm.org/doi/10.1128/...
journals.asm.org
Expansion of aerobic methanotrophy to the phylum of Actinomycetota and its environmental implications | Applied and Environmental Microbiology
The climate crisis is one of the most imminent threats to humanity and all life on our planet. Methane is not only the second most potent greenhouse gas (GHG) and is responsible for approximately 31% of GHG-induced global warming since the start of the industrial revolution (1) but is also the most rapid increasing GHG in the atmosphere (2). The latter is likely caused by increased microbiological production of methane from, e.g., wetlands (2). This fact stresses the importance of methanotrophic microbes that can degrade methane with and without oxygen (3, 4) and thereby fulfill a crucial role in our global climate.
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Reposted by Kyohei Kuroda
Hiro Imachi @hiro-imachi.bsky.social · 01/08/2025
“Isolation of a new methanotroph belonging to Mycobacterium” is now out! Awesome work by my former postdoc Hiromi Kambara, who led this project all the way. journals.asm.org/doi/10.1128/...
journals.asm.org
First isolation of a methanotrophic Mycobacterium reveals ammonia- and pH-tolerant methane oxidation | Applied and Environmental Microbiology
Methane is a significant contributor to climate change (27 times more potent as a greenhouse gas than carbon dioxide), and the largest biological sink is methane-oxidizing bacteria: methanotrophs. Alt...
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Reposted by Kyohei Kuroda
Cameron Thrash @jcamthrash.bsky.social · 30/06/2025
Expanding ISME communications to taxonomy and nomenclature academic.oup.com/ismecommun/a... #jcampubs
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Reposted by Kyohei Kuroda
STCmicrobeblog @stcmicrobeblog.bsky.social · 14/04/2025
schaechter.asmblog.org/schaechter/2... #MicroSky #Archaea #ArchaeaSky #SymbioSky
schaechter.asmblog.org
Cultivating the Ancestors… (2|4)
by Christoph — Based on their knowledge of the morphology of P. syntrophicum MK-D1 from electron micro­scopy and their knowledge of its physiology from growth assays and genome analysis, Imachi, Nobu...
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Reposted by Kyohei Kuroda
Evgenii Protasov @evgenii-protasov.bsky.social · 17/03/2025
Isolation of an anaerobic, thermophilic bacterium, Atrimonas thermophila gen. nov., sp. nov. of the class Atribacteria from a high-temperature gas reservoir in Japan #microbiology #taxonomy #bacteria www.sciencedirect.com/science/arti...
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Reposted by Kyohei Kuroda
Masaru Nobu @masarunobu.bsky.social · 08/03/2025
Our archaea-parasitizing bacterium Minisyncoccus archaeiphilus from Minisyncoccota/CPR/Patescibacteria featured as Microbe of the Month! Amazing culture and images @kuroda-kyohei.bsky.social microb.io/3XxK9w2
microb.io
New species found in the most unexpected places
Each month, the Microbiology Society publishes the<em> <a href="https://www.microbiologyresearch.org/content/journal/ijsem" rel="noreferrer noopener" target="_blank">International Journal of Systemati...
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Reposted by Kyohei Kuroda
Masaru Nobu @masarunobu.bsky.social · 27/02/2025
New isolates from eukaryote's closest archaeal relative: ‘Hodarchaeales’!! Syntrophic microaerotolerant peptide-degrading anaerobic archaea w/ simple cell structure & protrusions. Features conserved across the phylum provide new insight into our ancestor’s biology! www.biorxiv.org/content/10.1...
biorxiv.org
Eukaryotes' closest relatives are internally simple syntrophic archaea
Eukaryotes are theorized to have originated from an archaeal phylum Promethearchaeota (formerly 'Asgard' archaea)1,2. The first cultured representatives revealed valuable insight3,4 but are distantly ...
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Reposted by Kyohei Kuroda
Hiro Imachi @hiro-imachi.bsky.social · 27/02/2025
Isolated in just 3 years! (previously, 12 years). We obtained two strains from 'Hodarchaeales', proposed to be closest to our archaeal ancestor. Our analysis suggests the ancestor was an anaerobic, syntrophic, peptidotrophic, archaeon with a simple intracellular structure and possible aerotolerance.
biorxiv.org
Eukaryotes' closest relatives are internally simple syntrophic archaea
Eukaryotes are theorized to have originated from an archaeal phylum Promethearchaeota (formerly 'Asgard' archaea)1,2. The first cultured representatives revealed valuable insight3,4 but are distantly ...
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Reposted by Kyohei Kuroda
Trends in Microbiology @cp-trendsmicrobiol.bsky.social · 18/02/2025
Composing a microbial symphony: synthetic communities for promoting plant growth
dlvr.it
Composing a microbial symphony: synthetic communities for promoting plant growth
Plant microbiomes are pivotal for host development, influencing growth, health, fitness, and evolution, and have emerged as promising resources for sustainable agriculture. However, leveraging these microbiomes to improve crop yield and resilience is…
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Reposted by Kyohei Kuroda
Microbiology Society @microbiologysociety.org · 14/02/2025
Researchers have isolated an ultrasmall bacterium belonging to a large phylogenetic group that includes various lineages of uncultivated bacteria — the CPR. Read the press release on the research, published in #IJSEM, here microb.io/4hBcCt6 🔬
microb.io
A novel bacteria parasitizing archaea
13 February 2025
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Reposted by Kyohei Kuroda
Mitsuo Sakamoto @m-sakamoto.bsky.social · 14/02/2025
Our article reached over 60 citations. Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron - Ikeyama - 2020 - onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron
Succinate production by Bacteroides thetaiotaomicron supported the growth of Phascolarctobacterium faecium and concomitant propionate production via the succinate pathway. We analyzed the transcripti....
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Reposted by Kyohei Kuroda
Mitsuo Sakamoto @m-sakamoto.bsky.social · 14/02/2025
Faecalibacterium prausnitzii strain A2-165 has already been reclassified as Faecalibacterium duncaniae. Our article reached over 45 citations. www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faec...
Faecalibacterium prausnitzii is one of the most important butyrate-producing bacteria in the human gut. Previous studies have suggested the presence of several phylogenetic groups, with differences at...
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Reposted by Kyohei Kuroda
Mitsuo Sakamoto @m-sakamoto.bsky.social · 14/02/2025
Great to see our latest paper on new species published in #IJSEM: Four species were isolated from a fecal sample in a patient with Parkinson’s disease with a history of duodenal resection: www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Desulfovibrio falkowii sp. nov., Porphyromonas miyakawae sp. nov., Mediterraneibacter flintii sp. nov. and Owariibacterium komagatae gen. nov., sp. nov., isolated from human faeces
Small, obligately anaerobic strains 13CB8CT, 13CB11CT, 13CB18CT and 13GAM1GT were isolated from a faecal sample in a patient with Parkinson’s disease with a history of duodenal resection. After conduc...
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Kyohei Kuroda @kuroda-kyohei.bsky.social · 13/02/2025
未知バクテリアの巨大系統群「CPR/Patescibacteria」に属し、アーキアに寄生する超微小バクテリアの培養に成功しました。 さらにそのバクテリアが属するCPRを新門Minisyncoccota門として提案しました!日本語のプレス記事もご覧ください。 www.aist.go.jp/aist_j/press...
aist.go.jp
産総研:メタン生成アーキアに寄生するバクテリア
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Kyohei Kuroda @kuroda-kyohei.bsky.social · 13/02/2025
Delighted to share our latest study on the first successful isolation of CPR bacteria parasitizing archaea! We propose taxonomic classification for a massively diverse of bacteria, including the novel phylum Minisyncoccota @microbiologysociety.org www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Minisyncoccus archaeiphilus gen. nov., sp. nov., a mesophilic, obligate parasitic bacterium and proposal of Minisyncoccaceae fam. nov., Minisyncoccales ord. nov., Minisyncoccia class. nov. and Minisyn...
In the domain Bacteria, one of the largest, most diverse and environmentally ubiquitous phylogenetic groups, Candidatus Patescibacteria (also known as candidate phyla radiation/CPR), remains poorly ch...
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Reposted by Kyohei Kuroda
Hiro Imachi @hiro-imachi.bsky.social · 11/02/2025
New bacterial phylum Minisyncoccota (formerly Ca. Patescibacteria or CPR) in the kingdom Bacillati. Congratulations, Kuroda-san, Narihiro-san, and Nobu (@masarunobu.bsky.social)! www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Minisyncoccus archaeiphilus gen. nov., sp. nov., a mesophilic, obligate parasitic bacterium and proposal of Minisyncoccaceae fam. nov., Minisyncoccales ord. nov., Minisyncoccia class. nov. and Minisyn...
In the domain Bacteria, one of the largest, most diverse and environmentally ubiquitous phylogenetic groups, Candidatus Patescibacteria (also known as candidate phyla radiation/CPR), remains poorly ch...
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