Reposted by Susanne Kooistra
I'm very happy to share that our work describing a geospatial approach to allocating transcripts for single cell spatial transcriptomics (in human brains) using the 10x Xenium platform is now out in @commsbio.nature.com! @barteggen.bsky.social @kooistrasm.bsky.social
www.nature.com/articles/s42...
nature.com
Beyond the nuclear border: single-cell analysis of in situ sequenced human brain tissue using cellular features - Communications Biology
Investigating the suitability of different strategies for transcript allocation, including nuclear borders, expanded nuclear borders, and post-run immunostaining masks, for in situ sequencing data gen...