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Ke Li

@keli5734.bsky.social
83 followers 173 following 1 posts

ID modeling / viral dynamics Associate Research Scientist @ Yale School of Public Health Modeling Unit PhD @ Melbourne Mathematical Biology Group

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Reposted by Ke Li
Sam Abbott @seabbs.bsky.social · 28/09/2026
A few years ago we (Kelly Charniga @sangwoopark.bsky.social et al.) did some thinking on how we should estimate and report epidemiological delay distributions (i.e incubation periods etc. etc.). journals.plos.org/ploscompbiol...
journals.plos.org
Best practices for estimating and reporting epidemiological delay distributions of infectious diseases
Epidemiological delays are key quantities that inform public health policy and clinical practice. They are used as inputs for mathematical and statistical models, which in turn can guide control strat...
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Reposted by Ke Li
Stephen Kissler @skissler.bsky.social · 29/07/2026
I'm excited to share a preprint that's been years in the making: the idea took shape during the COVID pandemic. Anecdotally, people would sometimes spread COVID at work but not at home, and vice versa. Why? One explanation would be if infectiousness is fleeting...
medrxiv.org
How bursty infectiousness shapes epidemic dynamics
An epidemic’s expected course is determined by the magnitude and timing of a typical person’s infectiousness — captured, in turn, by the basic reproduction number and the generation-time distribution....
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Reposted by Ke Li
Nathan Grubaugh @nathangrubaugh.bsky.social · 17/04/2026
Dan Weinberger and I @yalesph.bsky.social are hiring multiple research positions in microbial/virus sequencing and bioinformatics workflows with respiratory pathogens, including Streptococcus pneumoniae, Mycobacterium tuberculosis, RSV, and/or hMPV. See 👉 forms.gle/xpmzTtNqHFqK...
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Reposted by Ke Li
NetScience @netscience.bsky.social · 05/12/2025
Random time-shift approximation enables hierarchical Bayesian inference of mechanistic within-host viral dynamics models on large datasets journals.plos.org/ploscompbiol...
journals.plos.org
Random time-shift approximation enables hierarchical Bayesian inference of mechanistic within-host viral dynamics models on large datasets
Author summary Understanding how viruses reproduce within an infected host is crucial for predicting disease progression and evaluating treatments. One way to study this is by using mathematical model...
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Ke Li @keli5734.bsky.social · 03/10/2025
Check out our new publication on viral interference! www.nature.com/articles/s41...
nature.com
Unraveling the role of viral interference in disrupting biennial RSV epidemics in northern Stockholm - Nature Communications
This study conducted a 20-year analysis in Stockholm showing that RSV epidemic patterns shifted due to viral interference from influenza, particularly, pandemic H1N1, highlighting the complex interactions between co-circulating respiratory viruses.
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Reposted by Ke Li
Chantal Vogels @chantalvogels.bsky.social · 19/09/2025
📢New preprint on the impact of dengue virus genetic diversity on inhibition by Wolbachia 🦟🦠🧬 Project led by Afeez Sodeinde, @emiliefinch.bsky.social, and @keli5734.bsky.social! ✨ Key findings in thread below 👇 www.biorxiv.org/content/10.1...
biorxiv.org
Heterogeneity in inhibition of genetically diverse dengue virus strains by Wolbachia
The release of Aedes aegypti mosquitoes transinfected with the virus-inhibiting Wolbachia bacterium has the potential to reduce the burden caused by dengue virus (DENV). However, the robustness of thi...
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Reposted by Ke Li
The Journal of Infectious Diseases @jidjournal.bsky.social · 05/05/2025
Exploring RSV transmission patterns in different age groups in the United States ✅ Just Accepted #IDSky
doi.org
Exploring RSV transmission patterns in different age groups in the United States
Respiratory syncytial virus (RSV) infections are a significant public health concern for pediatric populations and older adults, with seasonal winter outbreaks in the United States (US).
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Reposted by Ke Li
The Journal of Infectious Diseases @jidjournal.bsky.social · 20/03/2025
Relating in vivo RSV infection kinetics to host infectiousness in different age groups ✅ Just Accepted #IDSky
doi.org
Relating in vivo RSV infection kinetics to host infectiousness in different age groups
Respiratory syncytial virus (RSV) infections are a major public health concern for pediatric populations and older adults.
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