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Julia Rühle

@juruehle.bsky.social
86 followers 127 following 8 posts

Postdoc @CRG.eu with @larsplus.bsky.social | Single Cell Tech Dev & Functional Genomics

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Reposted by Julia Rühle
Lars Velten @larsplus.bsky.social · 04/03/2026
Now, synthetic enhancers with single cells - great work by @juruehle.bsky.social : www.biorxiv.org/content/10.6...
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Julia Rühle @juruehle.bsky.social · 04/03/2026
The main project of my PhD 🧬🔬 is out: we developed single-cell lentiMPRA, a lentivirus-based method to measure enhancer activity and transcriptomes at single-cell resolution. We then applied sc-lentiMPRA to fully synthetic enhancers 🧩... 🔗 doi.org/10.64898/202...
doi.org
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Reposted by Julia Rühle
Deutsches Krebsforschungszentrum (DKFZ) @dkfz.bsky.social · 21/05/2025
Researchers from the @crg.eu, the @irbbarcelona.org, and the DKFZ have discovered that the reservoir of blood stem cells shrinks with #age. It becomes increasingly dominated by stem cells that produce pro-inflammatory immune cells. t1p.de/kjf02 👇
t1p.de
How aging changes the blood system in humans and mice
The reservoir of blood stem cells shrinks with age. It becomes increasingly dominated by stem cells that produce immune cells associated with chronic inflammation. Almost all of the 60-year-olds studi...
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Reposted by Julia Rühle
Lars Velten @larsplus.bsky.social · 21/05/2025
Out @nature.com: Clonal tracing with somatic epimutations 🧬 Single cell methylome encodes cell state & clonal identity 🔨 EPI-Clone reads out both (+mutations, +RNA) at scale 🩸 Clonal expansions of HSCs are universal from age 50, not driven by CH mutations doi.org/10.1038/s415... 🧵
doi.org
Clonal tracing with somatic epimutations reveals dynamics of blood ageing - Nature
The discovery that DNA methylation of different CpG sites can serve as digital barcodes of clonal identity led to the development of EPI-Clone, an algorithm that enables single-cell lineage tracing th...
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Julia Rühle @juruehle.bsky.social · 09/05/2025
🧬🔍How can enhancers achieve tissue-specific activity? We use MPRAs of synthetic enhancers to derive interpretable rules on TFBS arrangement 🚦 and discover that negative synergies drive specificity in hematopoiesis 🩸. Shoutout to @Robert Frömel & @larsplus.bsky.social for leading this work 🦹🦸.
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Reposted by Julia Rühle
Michael Scherer @scherermich.bsky.social · 22/04/2025
Honored to be able to speak among such an amazing line-up of speakers. Check out the Single Cell Genomics Day 2025 if you want to learn more about DNA methylation based lineage tracing: satijalab.org/scgd25/
satijalab.org
Single Cell Genomics Day
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