Reposted by Julia RühleLars Velten @larsplus.bsky.social · 04/03/2026Now, synthetic enhancers with single cells - great work by @juruehle.bsky.social : www.biorxiv.org/content/10.6... 0112
Julia Rühle @juruehle.bsky.social · 04/03/2026The main project of my PhD 🧬🔬 is out: we developed single-cell lentiMPRA, a lentivirus-based method to measure enhancer activity and transcriptomes at single-cell resolution. We then applied sc-lentiMPRA to fully synthetic enhancers 🧩... 🔗 doi.org/10.64898/202...doi.org 34613
Reposted by Julia RühleDeutsches Krebsforschungszentrum (DKFZ) @dkfz.bsky.social · 21/05/2025Researchers from the @crg.eu, the @irbbarcelona.org, and the DKFZ have discovered that the reservoir of blood stem cells shrinks with #age. It becomes increasingly dominated by stem cells that produce pro-inflammatory immune cells. t1p.de/kjf02 👇t1p.deHow aging changes the blood system in humans and miceThe reservoir of blood stem cells shrinks with age. It becomes increasingly dominated by stem cells that produce immune cells associated with chronic inflammation. Almost all of the 60-year-olds studi... 1137
Reposted by Julia RühleLars Velten @larsplus.bsky.social · 21/05/2025Out @nature.com: Clonal tracing with somatic epimutations 🧬 Single cell methylome encodes cell state & clonal identity 🔨 EPI-Clone reads out both (+mutations, +RNA) at scale 🩸 Clonal expansions of HSCs are universal from age 50, not driven by CH mutations doi.org/10.1038/s415... 🧵doi.orgClonal tracing with somatic epimutations reveals dynamics of blood ageing - NatureThe discovery that DNA methylation of different CpG sites can serve as digital barcodes of clonal identity led to the development of EPI-Clone, an algorithm that enables single-cell lineage tracing th... 712742
Julia Rühle @juruehle.bsky.social · 09/05/2025🧬🔍How can enhancers achieve tissue-specific activity? We use MPRAs of synthetic enhancers to derive interpretable rules on TFBS arrangement 🚦 and discover that negative synergies drive specificity in hematopoiesis 🩸. Shoutout to @Robert Frömel & @larsplus.bsky.social for leading this work 🦹🦸. 0132
Reposted by Julia RühleMichael Scherer @scherermich.bsky.social · 22/04/2025Honored to be able to speak among such an amazing line-up of speakers. Check out the Single Cell Genomics Day 2025 if you want to learn more about DNA methylation based lineage tracing: satijalab.org/scgd25/satijalab.orgSingle Cell Genomics Daysection.section { padding: 0.25rem; padding-bottom: 0.5rem } div.iframe-wrapper { position: relative; margin: 0 auto; width: 50%; /* Reduced from 72% */ height: 50%; /* Reduced from 72% */ padding-bot... 173