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Joe Yesselman

@josephyesselman.bsky.social
249 followers 121 following 26 posts

RNA structural biologist, developing RNA-based nanomachines for therapeutic and biosensing applications. yesselmanlab.com

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Joe Yesselman @josephyesselman.bsky.social · 11/08/2026
New preprint from the lab! Riboswitches toggle by rearranging base pairs. Can you get the same toggling without changing the secondary structure? Turns out yes. We designed a minimal modular RNA that forms or breaks a tertiary contact in response to ligand binding. www.biorxiv.org/content/10.6...
biorxiv.org
Single-base substitutions switch RNA tertiary allostery between positive and negative coupling.
Riboswitches regulate gene expression in response to ligand binding, remodeling their secondary structure to terminate transcription or block translation. This innate switching has driven efforts to r...
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Joe Yesselman @josephyesselman.bsky.social · 17/07/2026
New paper! While it has been known that DMS encodes more information than secondary structure, it has never really been characterized. So we did the first large study to look: 7,500 RNAs, all with known 3D structures. We found a lot of cool structural relationships. doi.org/10.1093/nar/...
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Joe Yesselman @josephyesselman.bsky.social · 12/12/2024
Excited to announce a new collaborative preprint about a structural concept 'local stability compensation'. This states structurally important motifs must be flanked by more stable helices. We observe this effect natural occurring RNAs and experimentally evaluate it. www.biorxiv.org/content/10.1...
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Joe Yesselman @josephyesselman.bsky.social · 03/12/2024
It's great to see the latest RNA puzzles paper has come out. www.nature.com/articles/s41... Its a must-read for those interested in RNA structure prediction!
nature.com
RNA-Puzzles Round V: blind predictions of 23 RNA structures - Nature Methods
The results of the Fifth RNA-Puzzles contest highlights advances in RNA three-dimensional structure prediction and uncovers new insights into RNA folding and structure.
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Joe Yesselman @josephyesselman.bsky.social · 25/11/2024
🧬 Excited to share our new preprint! DMS chemical mapping, a key technique for studying RNA structure. Everyone assumes low DMS reactivity = Watson-Crick , high = non-WC. However, analyzing 7,500 RNA structures containing known 3D structures reveals it's not that simple. doi.org/10.1101/2024...
biorxiv.org
A quantitative framework for structural interpretation of DMS reactivity
Dimethyl sulfate (DMS) chemical mapping is widely used for probing RNA structure, with low reactivity interpreted as Watson-Crick (WC) base pairs and high reactivity as unpaired nucleotides. Despite i...
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Joe Yesselman @josephyesselman.bsky.social · 19/11/2024
I hope this place is more positive and science-friendly than Twitter. I look forward to chatting about awesome science.
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