Reposted by Jeremy MartinsonJulius Brennecke @juliusbrennecke.bsky.social · 17/09/2025PIWI clade Argonautes are essential for transposon silencing. Without them, animals are sterile due to massive transposon activity. But how does piRNA-guided target interaction translate into silencing? PhD student Júlia Portell Montserrat has an intriguing answer www.cell.com/molecular-ce... 28941
Reposted by Jeremy MartinsonMatt Higgins @parasitematt.bsky.social · 16/09/2025Delighted to review the latest findings on how malaria parasites get into our blood cells and how we might stop it! 0137
Reposted by Jeremy MartinsonMichael Baym @baym.lol · 01/09/2025What was antibiotic resistance like before we ever used antibiotics? How did we change what antibiotic resistance genes looked like over 100 years? Our paper looking at resistance genes from a century of NCTC historical isolates now out in mGen: www.microbiologyresearch.org/content/jour...microbiologyresearch.orgGenomic resistance in historical clinical isolates increased in frequency and mobility after the age of antibioticsAntibiotic resistance is frequently observed shortly after the clinical introduction of an antibiotic. Whether and how frequently that resistance occurred before the introduction is harder to determin... 920688
Reposted by Jeremy MartinsonBas van Steensel lab (NKI) @basvansteensellab.bsky.social · 02/09/2025Very proud of our paper on "scrambling-by-hopping" LADs, which was just published: www.nature.com/articles/s41.... Congrats to Lise Dauban and the rest of the team – this was a real tour-de-force! 05824
Reposted by Jeremy MartinsonJeremy Garb @garbjeremy.bsky.social · 02/09/2025📢 New preprint alert! We designed synthetic proteins that can block bacterial immune systems, allowing phages + plasmids to overcome natural defenses. This could transform phage therapy + genetic engineering. Here’s what we found 🧵 Preprint🔗: www.biorxiv.org/content/10.1...biorxiv.orgSynthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infectionBacterial defense systems present considerable barriers to both phage infection and plasmid transformation. These systems target mobile genetic elements, limiting the efficacy of bacteriophage-based t... 24624
Reposted by Jeremy MartinsonJames McInerney @jomcinerney.bsky.social · 29/08/2025New preprint reveals bacteria can't just collect all resistance genes like Pokemon cards. We found mutually exclusive evolutionary pathways to multidrug resistance in E. coli & P. aeruginosa - some resistance mechanisms actively prevent others from coexisting www.biorxiv.org/content/10.1...biorxiv.orgGenomic constraints shape the evolution of alternative routes to drug resistance in prokaryotesBackground Variation within the prokaryotic pangenome is not random, and natural selection that favours particular combinations of genes appears to dominate over random drift. What is less clear is wh... 416577
Reposted by Jeremy MartinsonJeffrey Ross-Ibarra @jrossibarra.bsky.social · 10/08/2025Day 3 of popgen we talked about effective population size. No, I don't really understand it. You probably don't either. But I highly recommend this fantastic guide about how to think about Ne onlinelibrary.wiley.com/doi/10.1111/...onlinelibrary.wiley.comThe Idiot's Guide to Effective Population SizeThis is a reference manual for the elegant, yet hideously complex concept of effective population size (Ne), inspired by a classic, self-published manual of automotive repair ‘for the compleat idiot’... 48422
Reposted by Jeremy MartinsonMwahahahahahadScientist @mads100tist.bsky.social · 11/08/2025OH COME ON 23714
Reposted by Jeremy MartinsonDr Sian Gramates @drglam.bsky.social · 11/08/2025I just got the notice that all the FlyBase people at Harvard, including me, will be laid off on October 12. I'm devastated. 63376223
Reposted by Jeremy MartinsonNature @nature.com · 30/06/2025After a quarter of a century, the UCSC Genome Browser remains an essential tool for navigating the genome and understanding its structure, function and clinical impact go.nature.com/40wPxkBgo.nature.com’We couldn’t live without it’: the UCSC Genome Browser turns 25After a quarter of a century, the website remains an essential tool for navigating the genome and understanding its structure, function and clinical impact. 07932
Reposted by Jeremy MartinsonPieter Dorrestein @pieterdorrestein.bsky.social · 12/06/2025If you have ever wondered what might happen to short chain fatty acids made by the microbiome. Here is a large class of metabolites and how they link to biology. www.cell.com/cell/fulltex...cell.comThe microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipidsMass spectrometry data mining tools enabled the creation of an MS/MS spectral library containing hundreds of N-acyl lipids, including conjugates with short-chain fatty acids. This resource enabled the... 29341
Reposted by Jeremy MartinsonGary Longsine 📱 @arbiteriapetus.bsky.social · 06/06/2025"The husband-and-wife team worked out how microbes – including those that cause TB and measles – can stow away in tiny droplets that we release even when only quietly breathing. Air currents can keep these aloft for hours, and in an unventilated room, other people can readily breathe them in." 14914
Reposted by Jeremy MartinsonMaxim Greenberg @maxvcg.bsky.social · 21/05/2025TF binding is usually anticorrelated with DNA methylation, but there are very few studies that actually investigate why. This is really nice work from Jacques Drouin's lab showing PAX7 physically interacts with UHFR1, blocking DNMT1 recruitment @ircm.bsky.social www.science.org/doi/10.1126/...science.orgDual DNA demethylation mechanisms implement epigenetic memory driven by the pioneer factor PAX7Pioneer factor PAX7 highjacks control of DNA methylation maintenance, leading to enhancer demethylation and epigenetic memory. 17019
Jeremy Martinson @jjmartinson.bsky.social · 12/05/2025Way back in the mists of time, when Tw*tter was still useful, you could make a widget that you embedded in a webpage, and any tweet with a certain hashtag would end up being shown on the page. Can any @bsky.app @support.bsky.team wizards tell me if it's possible to do the same here? 100
Jeremy Martinson @jjmartinson.bsky.social · 28/03/2025Even with all the current uncertainty, we still have to get our papers out. 000
Jeremy Martinson @jjmartinson.bsky.social · 10/01/2025I wrote an email in a work thread a couple of days ago that was so informative that today's meeting on the topic has been cancelled as it's "no longer necessary". You don't catch lightning in a bottle like that every day. 020
Reposted by Jeremy MartinsonJason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social · 09/01/2025🧬📝🚨 Out today: A genomics learning framework for undergraduates We hope this will be one more tool to help integrate genomics into undergraduate education by supporting evidence-based curriculum design with a set of standardized concepts. journals.plos.org/plosone/arti...journals.plos.orgA genomics learning framework for undergraduatesGenomics is an increasingly important part of biology research. However, educating undergraduates in genomics is not yet a standard part of life sciences curricula. We believe this is, in part, due to... 49535
Reposted by Jeremy MartinsonKhoa @khoavuumn.bsky.social · 02/01/2025Researcher: "We let the data speak for itself." Earlier that day: 9679171003
Jeremy Martinson @jjmartinson.bsky.social · 29/12/2024It's been known for a while that interbreeding with Neanderthals introduced immune response gene alleles into modern humans that increase resistance to some viruses. Looks like it may have been more important than we realised. www.bbc.com/news/article...bbc.comHumans may not have survived without NeanderthalsA new DNA analysis has shown that the arrival of modern humans from Africa was far from smooth. 001
Jeremy Martinson @jjmartinson.bsky.social · 29/12/2024Oh, great. African trypanosomes can evolve to remove dependency on tsetse for transmission. www.nature.com/articles/s41...nature.comMechanisms of life cycle simplification in African trypanosomes - Nature CommunicationsAfrican trypanosomes can reduce their requirement for tsetse fly transmission, allowing an expanded geographical range. Here, molecular analyses of field and laboratory selected lines has identified a... 010