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Jeremy Martinson

@jjmartinson.bsky.social
94 followers 116 following 29 posts

Human genetics; epigenetics; infectious disease; ageing; dementia. The usual stuff. Oh, Public Health too. Faculty at the University of Pittsburgh.

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Reposted by Jeremy Martinson
Julius Brennecke @juliusbrennecke.bsky.social · 17/09/2025
PIWI clade Argonautes are essential for transposon silencing. Without them, animals are sterile due to massive transposon activity. But how does piRNA-guided target interaction translate into silencing? PhD student Júlia Portell Montserrat has an intriguing answer www.cell.com/molecular-ce...
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Reposted by Jeremy Martinson
Matt Higgins @parasitematt.bsky.social · 16/09/2025
Delighted to review the latest findings on how malaria parasites get into our blood cells and how we might stop it!
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Reposted by Jeremy Martinson
Michael Baym @baym.lol · 01/09/2025
What was antibiotic resistance like before we ever used antibiotics? How did we change what antibiotic resistance genes looked like over 100 years? Our paper looking at resistance genes from a century of NCTC historical isolates now out in mGen: www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Genomic resistance in historical clinical isolates increased in frequency and mobility after the age of antibiotics
Antibiotic resistance is frequently observed shortly after the clinical introduction of an antibiotic. Whether and how frequently that resistance occurred before the introduction is harder to determin...
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Reposted by Jeremy Martinson
Bas van Steensel lab (NKI) @basvansteensellab.bsky.social · 02/09/2025
Very proud of our paper on "scrambling-by-hopping" LADs, which was just published: www.nature.com/articles/s41.... Congrats to Lise Dauban and the rest of the team – this was a real tour-de-force!
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Reposted by Jeremy Martinson
Jeremy Garb @garbjeremy.bsky.social · 02/09/2025
📢 New preprint alert! We designed synthetic proteins that can block bacterial immune systems, allowing phages + plasmids to overcome natural defenses. This could transform phage therapy + genetic engineering. Here’s what we found 🧵 Preprint🔗: www.biorxiv.org/content/10.1...
biorxiv.org
Synthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infection
Bacterial defense systems present considerable barriers to both phage infection and plasmid transformation. These systems target mobile genetic elements, limiting the efficacy of bacteriophage-based t...
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Reposted by Jeremy Martinson
James McInerney @jomcinerney.bsky.social · 29/08/2025
New preprint reveals bacteria can't just collect all resistance genes like Pokemon cards. We found mutually exclusive evolutionary pathways to multidrug resistance in E. coli & P. aeruginosa - some resistance mechanisms actively prevent others from coexisting www.biorxiv.org/content/10.1...
biorxiv.org
Genomic constraints shape the evolution of alternative routes to drug resistance in prokaryotes
Background Variation within the prokaryotic pangenome is not random, and natural selection that favours particular combinations of genes appears to dominate over random drift. What is less clear is wh...
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Reposted by Jeremy Martinson
Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 10/08/2025
Day 3 of popgen we talked about effective population size. No, I don't really understand it. You probably don't either. But I highly recommend this fantastic guide about how to think about Ne onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
The Idiot's Guide to Effective Population Size
This is a reference manual for the elegant, yet hideously complex concept of effective population size (Ne), inspired by a classic, self-published manual of automotive repair ‘for the compleat idiot’...
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Reposted by Jeremy Martinson
MwahahahahahadScientist @mads100tist.bsky.social · 11/08/2025
OH COME ON
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Reposted by Jeremy Martinson
Dr Sian Gramates @drglam.bsky.social · 11/08/2025
I just got the notice that all the FlyBase people at Harvard, including me, will be laid off on October 12. I'm devastated.
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Reposted by Jeremy Martinson
Nature @nature.com · 30/06/2025
After a quarter of a century, the UCSC Genome Browser remains an essential tool for navigating the genome and understanding its structure, function and clinical impact go.nature.com/40wPxkB
go.nature.com
’We couldn’t live without it’: the UCSC Genome Browser turns 25
After a quarter of a century, the website remains an essential tool for navigating the genome and understanding its structure, function and clinical impact.
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Reposted by Jeremy Martinson
Pieter Dorrestein @pieterdorrestein.bsky.social · 12/06/2025
If you have ever wondered what might happen to short chain fatty acids made by the microbiome. Here is a large class of metabolites and how they link to biology. www.cell.com/cell/fulltex...
cell.com
The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids
Mass spectrometry data mining tools enabled the creation of an MS/MS spectral library containing hundreds of N-acyl lipids, including conjugates with short-chain fatty acids. This resource enabled the...
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Reposted by Jeremy Martinson
Gary Longsine 📱 @arbiteriapetus.bsky.social · 06/06/2025
"The husband-and-wife team worked out how microbes – including those that cause TB and measles – can stow away in tiny droplets that we release even when only quietly breathing. Air currents can keep these aloft for hours, and in an unventilated room, other people can readily breathe them in."
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Reposted by Jeremy Martinson
Maxim Greenberg @maxvcg.bsky.social · 21/05/2025
TF binding is usually anticorrelated with DNA methylation, but there are very few studies that actually investigate why. This is really nice work from Jacques Drouin's lab showing PAX7 physically interacts with UHFR1, blocking DNMT1 recruitment ‪@ircm.bsky.social‬ www.science.org/doi/10.1126/...
science.org
Dual DNA demethylation mechanisms implement epigenetic memory driven by the pioneer factor PAX7
Pioneer factor PAX7 highjacks control of DNA methylation maintenance, leading to enhancer demethylation and epigenetic memory.
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Jeremy Martinson @jjmartinson.bsky.social · 12/05/2025
Way back in the mists of time, when Tw*tter was still useful, you could make a widget that you embedded in a webpage, and any tweet with a certain hashtag would end up being shown on the page. Can any @bsky.app @support.bsky.team wizards tell me if it's possible to do the same here?
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Jeremy Martinson @jjmartinson.bsky.social · 28/03/2025
Even with all the current uncertainty, we still have to get our papers out.
Kirk and Scotty from Star Trek talking. Kirk says "I need more power" and Scotty replies "With this sample size? Ye cannae change the laws of statistics".
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Jeremy Martinson @jjmartinson.bsky.social · 10/01/2025
I wrote an email in a work thread a couple of days ago that was so informative that today's meeting on the topic has been cancelled as it's "no longer necessary". You don't catch lightning in a bottle like that every day.
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Reposted by Jeremy Martinson
Jason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social · 09/01/2025
🧬📝🚨 Out today: A genomics learning framework for undergraduates We hope this will be one more tool to help integrate genomics into undergraduate education by supporting evidence-based curriculum design with a set of standardized concepts. journals.plos.org/plosone/arti...
journals.plos.org
A genomics learning framework for undergraduates
Genomics is an increasingly important part of biology research. However, educating undergraduates in genomics is not yet a standard part of life sciences curricula. We believe this is, in part, due to...
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Reposted by Jeremy Martinson
Khoa @khoavuumn.bsky.social · 02/01/2025
Researcher: "We let the data speak for itself." Earlier that day:
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Jeremy Martinson @jjmartinson.bsky.social · 29/12/2024
It's been known for a while that interbreeding with Neanderthals introduced immune response gene alleles into modern humans that increase resistance to some viruses. Looks like it may have been more important than we realised. www.bbc.com/news/article...
bbc.com
Humans may not have survived without Neanderthals
A new DNA analysis has shown that the arrival of modern humans from Africa was far from smooth.
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Jeremy Martinson @jjmartinson.bsky.social · 29/12/2024
Oh, great. African trypanosomes can evolve to remove dependency on tsetse for transmission. www.nature.com/articles/s41...
nature.com
Mechanisms of life cycle simplification in African trypanosomes - Nature Communications
African trypanosomes can reduce their requirement for tsetse fly transmission, allowing an expanded geographical range. Here, molecular analyses of field and laboratory selected lines has identified a...
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