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Jacopo Pasqualini

@jcppsqln.bsky.social
47 followers 74 following 0 posts

> Mining microbial communities, terabase after terabase > Theoretical Physicist turned Computational Biologist > Postdoc at Torsten Schwede Lab in Basel > 物の哀れ

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Reposted by Jacopo Pasqualini
Lorenzo Pantolini @lorenzopantolini.bsky.social · 01/12/2025
Fresh from bioRxiv our latest work introducing The Embedded Alphabet (TEA), a powerful new representation for protein sequences obtained by discretising ESM2 embeddings into 20 characters. Pre-print: www.biorxiv.org/content/10.1... 🧵👇(1/n)
biorxiv.org
Rewriting protein alphabets with language models
Detecting remote homology with speed and sensitivity is crucial for tasks like function annotation and structure prediction. We introduce a novel approach using contrastive learning to convert protein...
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Reposted by Jacopo Pasqualini
CAMEO-3D @cameo3d.org · 28/04/2025
Introducing CAMEO Structures & Complexes - automated weekly blind benchmarking of structure prediction servers. Now with heteromeric and protein-ligand complexes. Join us and register your server now! cameo3d.org
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Reposted by Jacopo Pasqualini
Torsten Schwede @torstenschwede.bsky.social · 26/02/2025
🧪🧬🔬 Postdoc in Computational Structural Biology at the @biozentrum.unibas.ch & @sib.swiss in Basel, Switzerland. www.biozentrum.unibas.ch/open-positio... The position is initially funded for 3 years, possibility to start immediately. #StructurePrediction, #Bioinformatics, #Uniprot3D, #AI
Open Postdoc Position at the schwede lab, Biozentrum Basel.
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Reposted by Jacopo Pasqualini
Janani Durairaj (Jay) @ninjani.bsky.social · 21/02/2025
Some very cool stuff from the group now in paper form: “ModelArchive: a deposition database for computational macromolecular structural models” doi.org/10.1016/j.jm... And “Comparing macromolecular complexes - a fully automated benchmarking suite” doi.org/10.21203/rs.... (under review)
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