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Jacqueline Toussaint

@jackietoussaint.bsky.social
87 followers 106 following 1 posts

PhD student in the Lees group @ Cambridge Uni & EMBL-EBI | bioinformatics | pathogen genomics | Rust, Stan, python, R

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Reposted by Jacqueline Toussaint
Sam Horsfield @samuelhorsfield.bsky.social · 24/09/2025
A new ggCaller version is out! v1.4 includes tweaks to improve efficiency, outputs Panaroo-friendly GFFs, and enables iterative gene calling; if you have already called a gene set, you can now add more genomes either one by one or in batches github.com/bacpop/ggCal...
github.com
GitHub - bacpop/ggCaller: Bifrost graph gene caller.
Bifrost graph gene caller. Contribute to bacpop/ggCaller development by creating an account on GitHub.
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Reposted by Jacqueline Toussaint
John Lees @johnlees.bacpop.org · 10/12/2024
The PopPIPE (github.com/bacpop/PopPIPE) analysis pipeline can be used to subcluster data, create visualisations and run transmission analyses. Preprint now here: www.biorxiv.org/content/10.1... Including a case study on nosocomial transmission of vancomycin resistant Enterococcus faecium
github.com
GitHub - bacpop/PopPIPE: Population analysis PIPEline 🛠🧬
Population analysis PIPEline 🛠🧬. Contribute to bacpop/PopPIPE development by creating an account on GitHub.
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