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Gibson Lab

@gibsonlab.io
34 followers 2 following 5 posts

We leverage tools from machine learning and control theory to advance our understanding of biological systems. (Harvard Medical School | Brigham and Women's Hospital) PI: @travis.gibsonlab.io Website: gibsonlab.io

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Reposted by Gibson Lab
Nature Microbiology @natmicrobiol.nature.com · 12/09/2025
#Newresearch This Bayesian statistical method uses timeseries microbiome data to infer interaction modules and is tested using a faecal transplant experiment in mice. #MicroSky www.nature.com/articles/s41...
nature.com
Learning ecosystem-scale dynamics from microbiome data with MDSINE2 - Nature Microbiology
This Bayesian statistical method uses timeseries microbiome data to infer interaction modules and is tested using a faecal transplant experiment in mice.
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Reposted by Gibson Lab
Travis Gibson @travis.gibsonlab.io · 05/08/2025
A nice blog post about our work www.nature.com/articles/s41... can be found here mgriblog.org/2025/08/04/c...
mgriblog.org
How a Scientist Followed Curiosity (and Love) to Build an Innovative Tool to Track Changes in the Gut Microbiome
Despite how common they are, scientists still don’t fully understand why some people develop allergies while others don’t.
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Gibson Lab @gibsonlab.io · 29/05/2025
Our paper is now open access as well.
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Reposted by Gibson Lab
Nature Microbiology @natmicrobiol.nature.com · 06/05/2025
🚨 Out now! Chronostrain - a method to profile low abundance strains in longitudinal microbiome samples 🦠💻 @travis.gibsonlab.io @younhk.bsky.social @gibsonlab.io @harvardmed.bsky.social @broadinstitute.org #MicroSky 🦠 #MicrobiomeSky www.nature.com/articles/s41...
nature.com
Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain - Nature Microbiology
ChronoStrain accurately profiles low-abundance strains in longitudinal samples by jointly modelling nucleotide sequencing errors, strain presence/absence and the temporal information associated with e...
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Gibson Lab @gibsonlab.io · 06/05/2025
"Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain" - Kim et al. rdcu.be/ekTwf
rdcu.be
Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain
Nature Microbiology - ChronoStrain accurately profiles low-abundance strains in longitudinal samples by jointly modelling nucleotide sequencing errors, strain presence/absence and the temporal...
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Gibson Lab @gibsonlab.io · 17/04/2025
Several Postdoctoral Fellow openings. All fellows have triple appointment at HMS,BWH, and Broad - Biological sequence models (theory, design, and application) - Learning single cell dynamics - Bacteriotherapy design, “bugs-as-drugs” (using control theory principles) gibsonlab.io/openings/
gibsonlab.io
Openings
Positions available in the Gibson Lab
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Gibson Lab @gibsonlab.io · 07/02/2025
Paper just accepted Gibson et al. "On the stability of gradient descent with second order dynamics for time-varying cost functions" Transactions Machine Learning Research (2025) openreview.net/forum?id=Hlz...
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