iiinova — where your digital self keeps evolving

Reposted by Fred Jaya

Michelle Wille @duckswabber.bsky.social · 27/01/2025

Between 2019 and 2023, researchers paid $8.968 billion to make papers open access. Imagine what else could be done with this money if it wasnt paid to for profit publishing companies... 👉 arxiv.org/abs/2407.16551

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Fred Jaya @fredjaya.bsky.social · 19/01/2025

Objects, for me, are one of those things that are conceptually easy to understand, but once you have to write your own this understanding breaks down so quickly

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Reposted by Fred Jaya

Australian BioCommons @ausbiocommons.bsky.social · 16/01/2025

We'd love to hear from all Australian researchers who can benefit from a centralised web platform for managing, launching and monitoring their Nextflow bioinformatics pipelines! www.biocommons.org.au/seqera-service

biocommons.org.au

Australian Nextflow Seqera Service — Australian BioCommons

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Fred Jaya @fredjaya.bsky.social · 16/01/2025

The dog when you return home after leaving for 27 minutes

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Fred Jaya @fredjaya.bsky.social · 13/01/2025

Post the best ways to wish someone a happy new years, I'll start:

A screenshot of a WhatsApp chat. The messages are:

"MERRY X'MAS" at 5:47 PM.

"HAPPY NEW YEAR" at 5:47 PM.

"MANUSCRIPT MAJOR REVISIONS" at 5:48 PM.

The response is:

"oh fuck lol" at 5:48 PM, with two blue checkmarks indicating the message has been read.

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Reposted by Fred Jaya

Joseph W. Brown @josephwb.bsky.social · 09/01/2025

if you are having dinner with a phylogeneticist it is rude to order basil

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Reposted by Fred Jaya

Emi Tanaka @emitanaka.org · 02/01/2025

Want to use your #statistics, ML/AI or #bioinformatics skills to solve problems in #agriculture? We are seeking 3 postdocs (up to 3 years) to join at ANU Biological Data Science Institute as part of Analytics for 🇦🇺 Grains industry by 📅 19 Jan We now also have a (WIP) website! 🌐 anu-aagi.github.io

ANU-AAGI team featuring investigators: Eric Stone, Emi Tanaka, Alan Welsh and Francis Hui

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Reposted by Fred Jaya

Ryan Wick @rrwick.bsky.social · 31/12/2024

New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: github.com/rrwick/Autoc... (1/5)

github.com

Home

A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler

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Fred Jaya @fredjaya.bsky.social · 24/12/2024

Amazing. Meanwhile I still can't get the bootloader working on an Arch install

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Reposted by Fred Jaya

Katherine Caley @katherinecaley.bsky.social · 17/12/2024

🐍🌲 piqtree: IQ-TREE2 meets Python via cogent3! 🤝⚡️ The developers of IQ-TREE2 and cogent3 have joined forces to bring the power of IQ-TREE2 to Python users as piqtree. piqtree exposes selected IQ-TREE2 capabilities within Python, using the cogent3 library as the interface...

github.com

piqtree: IQ-TREE2 meets Python via cogent3 · iqtree piqtree · Discussion #145

The developers of IQ-TREE2 and cogent3 have joined forces to bring the power of IQ-TREE2 to Python users as piqtree. piqtree exposes selected IQ-TREE2 capabilities within Python, using the cogent3 ...

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Reposted by Fred Jaya

Ryan Wick @rrwick.bsky.social · 17/12/2024

New release of Canu - first one in over 3 years! github.com/marbl/canu/r... The notes say this will be the very last release. Many thanks to its devs Brian Walenz and @sergek.bsky.social. Canu may be a bit old and it's certainly not fast, but it makes good assemblies and so I still use it!

github.com

Release Canu v2.3 · marbl/canu

These are release notes for Canu version 2.3, which was released on December 17th, 2024. Canu is specialized for assembly of single-molecule sequences. Full documentation can be found at http://can...

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Reposted by Fred Jaya

Alex Swarbrick @alexswarbrick.bsky.social · 12/12/2024

Jobortunities: Shortly advertising for 2 positions, both working on the Breast Cancer Atlas, in Sydney. - Wet lab research assistant: mol bio +/- pathology desirable - Comp. Research Assistant: scRNA-Seq, spatial transcriptomics and ML Details to follow, DM or email if you are a great fit.

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Fred Jaya @fredjaya.bsky.social · 10/12/2024

What started off as @katherinecaley.bsky.social and I seeing peoples github contributions and being like "wow, so coool...", turned out to become a year (mostly) of developing (mostly) good version control/software engineering habits.

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Reposted by Fred Jaya

rladiessydney.bsky.social @rladiessydney.bsky.social · 10/12/2024

🎉 Join us for our final R-Ladies Sydney event of 2024! 📅 When: Wednesday, December 18, 5:30 PM 📍 Where: Moore College, 1 King Street, Newtown 🎯 What: A casual social catch-up to network with fellow R enthusiasts, celebrate the year, and build new connections. 👉 RSVP here: bit.ly/3BaR32J

meetup.com

EOY In-Person R-Ladies Meetup: Share, Learn, and Connect!, Wed, Dec 18, 2024, 5:30 PM | Meetup

Join us for our final R-Ladies event of the year! This in-person gathering is a fantastic opportunity to: * Practice presenting your R-focused projects or work in a suppor

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Fred Jaya @fredjaya.bsky.social · 05/12/2024

Intro to @nextflow.io training done and dusted - thanks for having us, AMSI! @ausbiocommons.bsky.social

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