Florian Ingelfinger @florianingelfinger.bsky.social · 01/10/2026Thanks a lot Lorenz! I would love to hear back about your experience! Also please reach out if you need any support! ☺️ 010
Florian Ingelfinger @florianingelfinger.bsky.social · 01/10/20263/3 Try CytoVI on your own data! Open source in scvi-tools, with tutorials covering batch correction, integration of different antibody panels, and downstream analysis. docs.scvi-tools.org/en/stable/tu... I'd love to hear what you discover!docs.scvi-tools.orgCytometryQuick start tutorial for CytoVI, Advanced Tutorial: Multi-Panel Integration and Downstream Analysis with CytoVI. 011
Florian Ingelfinger @florianingelfinger.bsky.social · 01/10/20262/3 We also apply CytoVI to routine clinical data to identify CLL cells and classify patient samples—a step toward reusing clinical cytometry archives for research and reference mapping. Full walkthrough in our X tweetorial: x.com/IdoAmitLab/s...x.comIdoAmitLab (@IdoAmitLab) on XDifferent panels. Different technologies. Can we bring flow cytometry into biology’s AI revolution? Introducing CytoVI in @NatureMethods: linking cytometry & single-cell genomics to predict missing ma... 120
Florian Ingelfinger @florianingelfinger.bsky.social · 01/10/20261/3 Deep generative modeling coming to cytometry! 🔬 CytoVI is now in Nature Methods: integrate flow cytometry, mass cytometry & CITE-seq, predict missing markers, and discover disease-associated cell states. www.nature.com/articles/s41...nature.comCytoVI: deep generative modeling of antibody-based single cell data - Nature MethodsCytoVI is a deep generative model for statistically rigorous analysis of antibody-based single-cell data. 193
Florian Ingelfinger @florianingelfinger.bsky.social · 17/08/2026Glad to have you on board, Julia! 010
Florian Ingelfinger @florianingelfinger.bsky.social · 21/07/2026Thanks Lorenz! Credits go to bluesky-less Can for taking the lead in pushing this forward :) 010
Florian Ingelfinger @florianingelfinger.bsky.social · 21/07/2026Check out our recent study with Bettina Schreiner led by Can Ulutekin about COVID-associated GBS! 141
Florian Ingelfinger @florianingelfinger.bsky.social · 26/06/2026Fun times brainstorming in the black forest! 031
Reposted by Florian IngelfingerIngelfinger Lab @ingelfingerlab.bsky.social · 08/06/2026hello world. Excited to launch the Ingelfinger Lab account! We’re a young lab in Germany’s Black Forest tackling key questions in immunology with innovative single-cell technologies. Follow us for updates on systems immunology, machine learning & translational oncology. fi 0165
Florian Ingelfinger @florianingelfinger.bsky.social · 13/05/2026Many thanks for the invitation! Was fantastic to catch up with the local colleagues at HD! 020
Reposted by Florian Ingelfingermzhlab.bsky.social @mzhlab.bsky.social · 04/03/2026Join us in Münster to study the immunology of cerebrospinal fluid and the meninges in a human-centric fashion – apply for PhD student position here: jobs-sf.ukmuenster.de/job/UKM-PhD-...jobs-sf.ukmuenster.dePhD Student (gn*) Neuro-ImmunologyPhD Student (gn*) Neuro-Immunology 023
Florian Ingelfinger @florianingelfinger.bsky.social · 27/12/2025Highly relevant work - thanks for sharing Dr. Sankowski! 110
Reposted by Florian Ingelfingeridoamitlab.bsky.social @idoamitlab.bsky.social · 10/04/2025We are excited to share our new study @cp-cancercell.bsky.social identifying Zeb2 as a master genetic switch controlling the tumor-associated macrophage (TAM) program. Led by Fadi Sheban, Truong San Phan, Kai Kun Xie & @florianingelfinger.bsky.social. (1/20) www.cell.com/cancer-cell/...cell.comZEB2 is a master switch controlling the tumor-associated macrophage programSheban et al. present a single-cell CRISPR screen to dissect macrophage gene regulation in a pan-cancer tumor-associated macrophage (TAM) atlas. Using a generative model, they identify ZEB2 as a key d... 1195
Florian Ingelfinger @florianingelfinger.bsky.social · 20/02/2025Are you an immunologist interested in spatially-resolved single cell technologies and generative modeling but dont know where to start? Check out our recent EJI review with Avital Rodov, Hosna Baniadam, Robert Zeiser, @idoamitlab.bsky.social, Nir Yosef & Tobias Wertheimer!onlinelibrary.wiley.comTowards the Next Generation of Data‐Driven Therapeutics Using Spatially Resolved Single‐Cell Technologies and Generative AIThis review explores the technical advances in single-cell multi-omics technologies alongside the parallel development of generative AI tools to uncover biological insights. By integrating these inno... 0103
Reposted by Florian IngelfingerJulio Saez-Rodriguez @juliosaezrod.bsky.social · 11/02/2025Post-doc opening to join our lab @ebi.embl.org to develop&apply #bioinformatics and #machine-learning methods to study intra-/extra cellular networks to extract disease mechanisms from #single-cell and #spatial multiomic data - please share 🙏 : embl.wd103.myworkdayjobs.com/EMBL/job/Hin...embl.wd103.myworkdayjobs.comPostdoctoral fellow - Saez-Rodriguez GroupYour group Saez-Rodriguez Research Group Your supervisor Julio Saez-Rodriguez Your role As a postdoctoral fellow in the Saez Rodriguez group, you will develop and apply computational methods and tools... 05846
Reposted by Florian IngelfingerSaez-Rodriguez Group @saezlab.bsky.social · 05/02/2025Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41... 27837
Florian Ingelfinger @florianingelfinger.bsky.social · 31/01/2025Big congrats, thomas, tobi, roman and team!! 🔥🔥 000
Florian Ingelfinger @florianingelfinger.bsky.social · 22/01/2025Impossible to stay on the dark aide under these circumstances… talk to you soon @rsankowski.bsky.social :) 010