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Florian Ingelfinger

@florianingelfinger.bsky.social

217 followers 401 following 15 posts

Immunologist at the @ingelfingerlab.bsky.social Interested in innovative single cell technologies and computational biology. Formerly in Burkhard Becher, Ido Amit, Nir Yosef and Robert Zeiser labs.

Posts Replies Media

Florian Ingelfinger @florianingelfinger.bsky.social · 01/10/2026

1/3 Deep generative modeling coming to cytometry! 🔬 CytoVI is now in Nature Methods: integrate flow cytometry, mass cytometry & CITE-seq, predict missing markers, and discover disease-associated cell states. www.nature.com/articles/s41...

nature.com

CytoVI: deep generative modeling of antibody-based single cell data - Nature Methods

CytoVI is a deep generative model for statistically rigorous analysis of antibody-based single-cell data.

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Florian Ingelfinger @florianingelfinger.bsky.social · 17/08/2026

Glad to have you on board, Julia!

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Florian Ingelfinger @florianingelfinger.bsky.social · 21/07/2026

Check out our recent study with Bettina Schreiner led by Can Ulutekin about COVID-associated GBS!

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Florian Ingelfinger @florianingelfinger.bsky.social · 26/06/2026

Fun times brainstorming in the black forest!

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Reposted by Florian Ingelfinger

Ingelfinger Lab @ingelfingerlab.bsky.social · 08/06/2026

hello world. Excited to launch the Ingelfinger Lab account! We’re a young lab in Germany’s Black Forest tackling key questions in immunology with innovative single-cell technologies. Follow us for updates on systems immunology, machine learning & translational oncology. fi

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Florian Ingelfinger @florianingelfinger.bsky.social · 13/05/2026

Many thanks for the invitation! Was fantastic to catch up with the local colleagues at HD!

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Reposted by Florian Ingelfinger

mzhlab.bsky.social @mzhlab.bsky.social · 04/03/2026

Join us in Münster to study the immunology of cerebrospinal fluid and the meninges in a human-centric fashion – apply for PhD student position here: jobs-sf.ukmuenster.de/job/UKM-PhD-...

jobs-sf.ukmuenster.de

PhD Student (gn*) Neuro-Immunology

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Reposted by Florian Ingelfinger

idoamitlab.bsky.social @idoamitlab.bsky.social · 10/04/2025

We are excited to share our new study @cp-cancercell.bsky.social identifying Zeb2 as a master genetic switch controlling the tumor-associated macrophage (TAM) program. Led by Fadi Sheban, Truong San Phan, Kai Kun Xie & @florianingelfinger.bsky.social. (1/20) www.cell.com/cancer-cell/...

cell.com

ZEB2 is a master switch controlling the tumor-associated macrophage program

Sheban et al. present a single-cell CRISPR screen to dissect macrophage gene regulation in a pan-cancer tumor-associated macrophage (TAM) atlas. Using a generative model, they identify ZEB2 as a key d...

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Florian Ingelfinger @florianingelfinger.bsky.social · 20/02/2025

Are you an immunologist interested in spatially-resolved single cell technologies and generative modeling but dont know where to start? Check out our recent EJI review with Avital Rodov, Hosna Baniadam, Robert Zeiser, @idoamitlab.bsky.social, Nir Yosef & Tobias Wertheimer!

onlinelibrary.wiley.com

Towards the Next Generation of Data‐Driven Therapeutics Using Spatially Resolved Single‐Cell Technologies and Generative AI

This review explores the technical advances in single-cell multi-omics technologies alongside the parallel development of generative AI tools to uncover biological insights. By integrating these inno...

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Reposted by Florian Ingelfinger

Julio Saez-Rodriguez @juliosaezrod.bsky.social · 11/02/2025

Post-doc opening to join our lab @ebi.embl.org to develop&apply #bioinformatics and #machine-learning methods to study intra-/extra cellular networks to extract disease mechanisms from #single-cell and #spatial multiomic data - please share 🙏 : embl.wd103.myworkdayjobs.com/EMBL/job/Hin...

embl.wd103.myworkdayjobs.com

Postdoctoral fellow - Saez-Rodriguez Group

Your group Saez-Rodriguez Research Group Your supervisor Julio Saez-Rodriguez Your role As a postdoctoral fellow in the Saez Rodriguez group, you will develop and apply computational methods and tools...

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Reposted by Florian Ingelfinger

Saez-Rodriguez Group @saezlab.bsky.social · 05/02/2025

Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...

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