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Felix Zimmermann

@felix-zimmermann.bsky.social
449 followers 683 following 5 posts

PhD Candidate at @wslresearch.bsky.social & University of Neuchâtel (Croll Lab) 🇨🇭 | (Ecto)Mycorrhizal Ecology & Genomics 🍄🌳🧬

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Reposted by Felix Zimmermann
Daniel Croll @danielcroll.bsky.social · 04/09/2026
Our lab is looking for PhD students to join us in 2027 🎓🎉 The projects can be structured around our research directions: - Transposable element dynamics - Fungal pangenomics - ML/language model genomics applications - Pathogen adaptation More here pathogen-genomics.org ("Jobs") and please share! 🙏
pathogen-genomics.org
Evolutionary genomics of pathogens
Croll lab at University of Neuchatel. The lab of Daniel Croll wants to understand how pathogens evolve to cause disease. For this, we mainly focus on major crop pathogens to unravel mechanisms of rapi...
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Reposted by Felix Zimmermann
Andrew Hipp @andrewlhipp.bsky.social · 13/05/2026
I'm really happy to have this preprint out with Antoine Kremer, reviewing some of the uses / applications of oak genomes in the past decade. It picks up to a certain extent where our 2020 @newphyt.bsky.social review left off. Please feel free to share. ecoevorxiv.org/repository/v...
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Felix Zimmermann @felix-zimmermann.bsky.social · 05/05/2026
🍄🌲 If you are at @egu.eu general assembly Vienna this week and interested in mycorrhizal fungi, visit the session “Mycorrhizal fungi in natural ecosystems“ on Friday 🌳🍄‍🟫 Organized by @anthomycota.bsky.social , @eva-demullier.bsky.social , Mathias Mayer doi.org/10.5194/egus...
doi.org
Abstract EGU26-1742
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Reposted by Felix Zimmermann
Genome Biology and Evolution @genomebiolevol.bsky.social · 18/02/2026
Dauphin et al. assembled a telomere-to-telomere reference genome for an ectomycorrhizal fungus with a large, repeat-rich genome, showing its genome expansion was driven by a few lineage-specific TE families in recent history. 🔗 doi.org/10.1093/gbe/evag017 #genome #evolution #TEsky
doi.org
Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
Abstract. Transposable elements (TEs) play crucial roles in genome evolution and ecological adaptation in fungi, yet their dynamics in ectomycorrhizal spec
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Reposted by Felix Zimmermann
Katrin Heer @katrinheer.bsky.social · 19/12/2025
🌳 PhD Position in Forest Genetics @uni-freiburg.de Join the BeGenDiv project to study genetic diversity of ~30 tree & shrub species across Germany’s Biodiversity Exploratories. 🧬 Fieldwork, lab work, bioinformatics & interdisciplinary collaboration More info & apply: uni-freiburg.de/stellenangeb...
uni-freiburg.de
Universität Freiburg
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Reposted by Felix Zimmermann
Christian Rellstab @christian-rellstab.bsky.social · 06/11/2025
i am offering a post-doc position in my brand-new project TreeGD that will investigate genomic diversity of trees species in switzerland, with a special focus on gene conservation units, rare species (but not only), and seeds stands. apply.refline.ch/273855/1782/...
apply.refline.ch
Postdoktorand/-in in ökologischer Genomik 80% (w/m/d)
Die Forschungseinheit Biodiversität und Naturschutzbiologie untersucht die Vielfalt des Lebens, von der genetischen Diversität bis zur Arten- und Lebensraumvielfalt sowie ihre Interaktionen. Das für m...
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Reposted by Felix Zimmermann
Toby Baril @tobybarilbio.bsky.social · 29/10/2025
1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start? We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes! www.biorxiv.org/content/10.1...
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Felix Zimmermann @felix-zimmermann.bsky.social · 11/10/2025
An ectomycorrhizal fungus alters developmental progression during endogenous rhythmic growth in pedunculate oak Now published in Mycorrhiza, journal of the @mycorrhizaims.bsky.social link.springer.com/article/10.1...
link.springer.com
An ectomycorrhizal fungus alters developmental progression during endogenous rhythmic growth in pedunculate oak - Mycorrhiza
Pedunculate oak (Quercus robur L.), a long-lived forest tree species, forms symbiotic relationships with ectomycorrhizal (ECM) fungi, which can promote nutrient uptake, stress resilience, and growth. Like other tropical and temperate tree species, pedunculate oak exhibits endogenous rhythmic growth (ERG), a trait conferring the ability to repeatedly alternate root and shoot flushes as well as growth cessation as response to changing environmental conditions. However, the effects of different ECM fungal species on the ERG dynamics remain largely unknown. Here, we investigated the impact of two ECM fungi—Piloderma croceum, a basidiomycete previously shown to promote growth while not found in natural oak stands, and Cenococcum geophilum, an oak-native ascomycete with broad ecological range—on growth performance, biomass partitioning, and ERG patterns in a clonal oak system (clone DF159). By combining in vitro experiments with Bayesian modelling, we show that P. croceum promotes tree growth among treatments, without disrupting the endogenous growth rhythm. In contrast, C. geophilum, while showing high mycorrhization rates, led to reduced biomass accumulation and altered developmental progression through the ERG stages, especially by prolonging the steady state development stage—part of the root flush and characterized by peak net carbon assimilation. Co-inoculation revealed a competitive advantage of C. geophilum in root colonization, yet growth responses resembled those of the control. Our findings demonstrate that ECM species exert species-specific effects on biomass production and temporal development of plants, underscoring the functional importance of ECM fungi in shaping host development. Assessing these interactions provides new insights into the functional diversity of ectomycorrhizal symbiosis and can inform forest management strategies aimed at enhanced resilience in oak-dominated ecosystems under rapidly changing climatic conditions.
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Daniel Croll @danielcroll.bsky.social · 25/04/2025
Excited to do a postdoc in beautiful Neuchatel / Switzerland🇨🇭? We have several postdoc positions open at the moment! Check our website for the full ads here: pathogen-genomics.org/jobs Happy to answer any question and please spread the word to anyone who might be interested!
Swiss Alps seen from Neuchatel
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Reposted by Felix Zimmermann
Daniel Croll @danielcroll.bsky.social · 09/04/2025
Marie Curie Postdoctoral Fellowships (MSCA) Excited by fungi, genomes, transposons, sustainable agriculture, microbiomes or other topics? Looking for a friendly and interactive lab located in one of the most beautiful towns in Switzerland? 🇨🇭⛰️⛵ Get in touch and please share! pathogen-genomics.org
Lake Neuchatel and the Swiss Alps
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Reposted by Felix Zimmermann
Andrew Hipp @andrewlhipp.bsky.social · 22/02/2025
"... at least 20 to 40 mother trees... & 100 acorns per tree covers the genetic diversity of the seeds of a crop well... as many mother trees as possible" Practical guidance from @christian-rellstab.bsky.social : optimizing acorn collection for genetic diversity. www.waldwissen.net/de/waldwirts...
waldwissen.net
Genetische Vielfalt bei Eichen-Saatgut: Empfehlungen für die Praxis
Genetische Vielfalt ist Grundvoraussetzung dafür, dass sich Arten an sich ändernde klimatische Bedingungen anpassen und gegenüber extremen Umweltereignissen widerstandsfähig sind. Bei der künstlichen ...
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Reposted by Felix Zimmermann
Evolutionary Applications @evolappjournal.bsky.social · 07/02/2025
Soil properties – water availability and pH – are strongly associated to the spatial distribution of two hybridizing and sympatric oak species (Quercus spp) at local stand scale. w/@felix-zimmermann.bsky.social, @christian-rellstab.bsky.social doi.org/10.1111/eva.70076
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Reposted by Felix Zimmermann
Christian Rellstab @christian-rellstab.bsky.social · 07/02/2025
new paper in @evolappjournal.bsky.social with @felix-zimmermann.bsky.social ! Soil properties – water availability and pH – are strongly associated to the spatial distribution of two hybridizing and sympatric oak species (Quercus spp) at local stand scale. onlinelibrary.wiley.com/doi/10.1111/...
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Reposted by Felix Zimmermann
EvolTree @evoltree.bsky.social · 04/12/2024
EVOLTREE - Europe's network for researchers in forest ecology, evolution, genetics & genomics - has joined Bluesky. Follow us here for news on events, training courses, and funding opportunities ...... see evoltree.eu for more!
Image of a twisted old oak tree (Quercus petraea) on a grassy hillside
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WSL-Eawag Biodiversity Center @wslbiodiversity.bsky.social · 18/11/2024
Our first starter pack is here! A list of members and alumni of @wslresearch.bsky.social working on biodiversity research and outreach. It will updated as more people join. Let us know if you'd like to be added. go.bsky.app/3Gzw93e
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