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Evomics Lab

@evomicslab.bsky.social
144 followers 199 following 29 posts

Exploring Omics in the Light of Evolution PI: @iAmphioxus.bsky.social Web: www.evomicslab.org

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Evomics Lab @evomicslab.bsky.social · 15/09/2026
Very happy to share a recent preprint from our lab on multidimensional telomere characterization, which combines state-of-art software development and cross-species analysis on #telomere diversity regarding length, variant repeat, and DNA methylation. www.biorxiv.org/content/10.6...
biorxiv.org
Multidimensional telomere diversity and inheritance at individual and population scales
Variation in telomere length, sequence composition and epigenetic state influences genome stability, aging and disease, yet its high-resolution characterization across species remains challenging. Her...
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Evomics Lab @evomicslab.bsky.social · 03/08/2026
Happy to share our recent preprint on experimental evolution for bleomycin resistance in yeast, in which we highlight both background-dependent mutational footprints and a shared molecular mechanism underlying their adaptation. www.biorxiv.org/content/10.6... #yeast #LTEE
biorxiv.org
Genetic background diversifies mutational paths but converges on membrane depolarization for bleomycin resistance in yeast
Drug resistance evolution is shaped by both selective agent and genetic background in which resistant mutations arise, but most experimental evolution studies rely on a single genetic background. Here...
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Evomics Lab @evomicslab.bsky.social · 16/07/2026
Glad to see this joint work on nasopharyngeal microbiota culturomics published in #ScienceTranslationalMedicine, featured as a cover story! By building this local bacterial catalog, we characterized a Fusobacterium-Prevotella mutualism in nasopharyngeal tumors. www.science.org/doi/10.1126/...
science.org
Culturomics reveals Fusobacterium-Prevotella mutualism as a hallmark of nasopharyngeal tumor microbiota
A culturable nasopharyngeal bacterial catalog was built, which reveals mutualism between Fusobacterium and Prevotella that affects tumor therapy response.
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Evomics Lab @evomicslab.bsky.social · 15/04/2026
Glad to see this joint work finally out in Nature Cancer @natureportfolio.nature.com ! A truly tour-de-force multiomics quest into nasopharyngeal carcinoma subtyping and its clinical implications! www.nature.com/articles/s43...
nature.com
Multi-omic characterization of nasopharyngeal carcinoma delineates the subtype-specific landscape of response to induction chemotherapy - Nature Cancer
Li et al. conduct a multi-omics analysis of nasopharyngeal carcinoma and identify three molecular subtypes with distinct immune profiles and responses to induction chemotherapy.
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Evomics Lab @evomicslab.bsky.social · 23/03/2026
Excited to share our PNAS paper on the genome evolution of an early-diverging #amphioxus, Asymmetron lucayanum! There is a long and twisty story behind this work, which also explains the username choice of the lab PI @iamphioxus.bsky.social . 😀 @pnas.org www.pnas.org/doi/10.1073/...
pnas.org
Insights into cephalochordate genome and gene evolution from the early-diverging amphioxus Asymmetron lucayanum | PNAS
Cephalochordates (amphioxus or lancelet) are considered as living proxies for ancestral chordates due to their key phylogenetic position and slow e...
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 08/02/2026
Honored to serve @genomebiolevol.bsky.social and the greater @official-smbe.bsky.social community! 🫡
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 30/01/2026
Honored to serve on the Yeast Genetics Meeting Program Committee of Evolution & Population Genetics. Welcome for meeting registration and abstract submission, especially on our Evolution & Population Genetics program! genetics-gsa.org/yeast-2026/ @genetics-gsa.bsky.social #Yeast26
genetics-gsa.org
Homepage - Yeast Genetics Meeting 2026
Visit our website to learn more.
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Evomics Lab @evomicslab.bsky.social · 25/07/2025
First #SMBE meeting for our lab!Definitely a memorable experience. Already looking forward to the next one! @official-smbe.bsky.social #SMBE2025
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Evomics Lab @evomicslab.bsky.social · 23/07/2025
📣 Glad to share our genome paper on an early-diverged cephalochordate (amphioxus) species, Asymmetron lucayanum! By decoding & analyzing this genome in a comparative genomics framework, we know better now regarding the genome and gene evolution in cephalochordates. www.biorxiv.org/content/10.1...
biorxiv.org
The genome of the early diverged amphioxus, Asymmetron lucayanum, illuminates the evolution of genome architecture and gene repertoires in cephalochordates
Cephalochordates (amphioxus or lancelet) are considered as living proxies for ancestral chordates due to their key phylogenetic position and slow evolutionary rate. The genomes of living amphioxus thu...
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 22/07/2025
📣Our #SMBE 2025 Symposium (No. 3) on Experimental Evolution will be held today (7.22, Tuesday) at 10:30 in Room 4, Building No. 8. An associated poster session will be held at 14:00 (poster number: S3-P01~P16). Welcome to join! let's study evolution in action! 🥳 🎉 @official-smbe.bsky.social
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 17/06/2025
Welcome to attend our SMBE2025 Symposium on Experimental Evolution. Co-organized by Dao-Qiong Zheng, @‪jingli-0512.bsky.social‬ and myself.
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Evomics Lab @evomicslab.bsky.social · 28/04/2025
📢 3 Postdoc positions available in @evomicslab.bsky.social targeting on genome instability evolution of both yeast and human genomes. Both computational genomics and experimental genomics backgrounds are welcome! 🧬🧑‍💻🧪 For more information, see evomicslab.org or send me a message!
evomicslab.org
Evomics Lab – Exploring Omics in the Light of Evolution
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Evomics Lab @evomicslab.bsky.social · 15/02/2025
Glad to see the copy-edited version of our VRPG paper formally published in the latest issue of @genomeresearch.bsky.social ! We developed VRPG as a novel visualization framework for intuitively exploring pangenome graphs in a linear-reference-projected context. genome.cshlp.org/content/35/2...
genome.cshlp.org
Interactive visualization and interpretation of pangenome graphs by linear reference–based coordinate projection and annotation integration
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 12/02/2025
📢📢📢 The FINAL COUNT DOWN for the extended abstract submission deadline of #SMBE2025! Please submit your abstract by 23:59 (GMT +8) of February 15, 2025 [Saturday]! And shout out again for our symposium on Experimental Evolution ! 🎉🎉🎉 @OfficialSMBE #LTEE #ExperimentalEvolution
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Evomics Lab @evomicslab.bsky.social · 14/01/2025
📢🧬Proud to announce our 1st work on pangenome graphs is early online @genomeresearch.bsky.social ! Here we developed an interpretative visualization framework for pangenome graphs named VRPG, which seamlessly bridges the graph and linear genomics world. genome.cshlp.org/content/earl...
genome.cshlp.org
Interactive visualization and interpretation of pangenome graphs by linear-reference-based coordinate projection and annotation integration
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 10/01/2025
📢 2nd-round abstract submission call for the 2025 @OfficialSMBE annual meeting in #Beijing . Where: smbe2025.scimeeting.cn/en/web/index... When: now - 2025/01/30. Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!!
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Jia-Xing Yue (岳家兴) @iamphioxus.bsky.social · 20/12/2024
📣 ⚠️👀Attn: The abstract submission for the #SMBE2025 meeting in Beijing @official-smbe.bsky.social is open now! Submission site: smbe2025.scimeeting.cn/en/web/index... Submission Deadline: 2025.01.30 Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!!
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Evomics Lab @evomicslab.bsky.social · 13/12/2024
Welcome to join our dedicated symposium on Experimental Evolution for the @MolBioEvol 2025 Beijing Meeting! See you in Beijing!
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Evomics Lab @evomicslab.bsky.social · 10/12/2024
The copy-edited version of our NanoTrans paper has been recently published @JGenetGenomics ! Here we developed an all-in-one pipeline for comprehensive data analysis for @nanoporetech.com direct-RNA sequencing (#DRS). www.sciencedirect.com/science/arti...
sciencedirect.com
NanoTrans: an integrated computational framework for comprehensive transcriptome analysis with nanopore direct RNA sequencing
Nanopore direct RNA sequencing (DRS) provides the direct access to native RNA strands with full-length information, shedding light on rich qualitative…
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Evomics Lab @evomicslab.bsky.social · 17/11/2024
Excited to introduce the ScRAPdb work that we recently published at Nucleic Acids Research, in which we assembled a #pangenome x #multi-omics database for #yeast. This is one step forward for a pan-multi-omics understanding of genome & trait evolution. Read more > academic.oup.com/nar/advance-...
academic.oup.com
ScRAPdb: an integrated pan-omics database for the Saccharomyces cerevisiae reference assembly panel
Abstract. As a unicellular eukaryote, the budding yeast Saccharomyces cerevisiae strikes a unique balance between biological complexity and experimental tr
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