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Dylan Webster @dylanwebster.bsky.social · 17/02/2026

Another one. ☝️ Last week: ProPer-seq. This week: VIPerturb-seq from the Satija Lab. Paper after paper is proving @10xgenomics.bsky.social Flex is the definitive engine for genome-scale perturbation screens. The new stats are wild: 🚀 440k cells/lane 🚀 50x throughput boost 🚀 65% more genes/cell

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Dylan Webster @dylanwebster.bsky.social · 13/12/2024

Kudos to the Xenium Explorer team at 10x Genomics for consistently upleveling what's possible out of the box for Xenium analysis! Check out our analysis page to see all Xenium analysis improvements! bit.ly/4flCNSu #spatialbiology #insitu #singlecellspatial #bioinformatics

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Dylan Webster @dylanwebster.bsky.social · 07/12/2024

Want to help build software that enables researchers to answer biology’s hardest and most elusive questions? Do so as Senior Product Manager, Cloud Visualization Software at 10x Genomics! boards.greenhouse.io/10xgenomics/... #singlecell #spatialbiology #hiring #productmanagement #TechJobs

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Dylan Webster @dylanwebster.bsky.social · 18/11/2024

And now you can try the automated cell annotation directly in Cell Ranger 9! www.10xgenomics.com/support/soft... #singlecell #bioinformatics #genomics

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Dylan Webster @dylanwebster.bsky.social · 15/11/2024

Super excited about this cell typing collab between 10x Genomics and the Broad. broad.io/CAS-News Try it for free on cloud.10xgenomics.com/cloud-analysis and look out for more in the next Cell Ranger release coming imminently ;) (Let us know what you think!) #singlecell #bioinformatics #genomics

Infographic of the Cell Annotation Service

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Dylan Webster @dylanwebster.bsky.social · 13/10/2023

Did you know that 10x Genomics publishes intros, tutorials, and blogs that help navigate the journey to publish #SingleCell, Visium #SpatialTranscriptomics and Xenium #singlecellspatial data? Check out the Analysis Guides! www.10xgenomics.com/resources/an... #Genomics #Bioinformatics

Overview of the roadmap for 10x Genomics data analysis

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

And check out how the redesigned Loupe user interface makes it simple to visualize the expression of your favorite genes!

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

The feature I’m most excited about: Finding target genes in your experiment just got easier with the new multi-sample differential expression in Loupe 7

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

Want to analyze Seurat data without code? Use the new 10x Genomics LoupeR package to move your data into the new Loupe 7. It sports a redesigned UI, and includes new features that put publication-ready figures just a few clicks away! #genomics #singlecell

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

Finally, review the recommendations for optimal assay performance. Either accept the recommendations or iterate as needed. At the end of the workflow, your panel is ready to be ordered and manufactured. Check it out for yourself! cloud.10xgenomics.com/xenium-panel...

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

Next, paste the list of genes you want to include. You can easily clean up the list to resolve any ambiguous gene names, etc. Then start building the design when you’re done.

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

Easily design 10x Genomics #singlecellspatial custom panels with the new #Xenium Panel Designer: Start with a pre-designed panel, or build a standalone custom panel (up to 480 plex). Design against curated references from CELLxGENE and GEO or bring your own references.

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

Use the per-gene localization gallery to fly through expression of each individual gene.

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

If you do H&E on the same section as your Xenium run, XE 1.2 also provides an intuitive workflow to align and overlay H&E in the Xenium coordinate space so you can see sub-cellular gene expression on top of your histopathological ground truth.

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Dylan Webster @dylanwebster.bsky.social · 02/10/2023

Check out the amazing preview dataset for the Xenium Mouse Tissue Atlassing Panel, showing expression of 379 genes in a an FFPE mouse pup (one day old, C57BL/6 strain)! Screenshot from Xenium Explorer 1.2. www.10xgenomics.com/resources/da... www.10xgenomics.com/support/soft...

Screenshot from Xenium Explorer 1.2 of the preview dataset of the Xenium Mouse Tissue Atlassing Panel, showing expression of 379 genes in a an FFPE mouse pup (one day old, C57BL/6 strain)

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