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Dirk Benzinger

@dbenzinger.bsky.social
222 followers 203 following 4 posts

Postdoc at the Crick in the Briscoe Lab. Previously PhD student with Mustafa Khammash at ETHZ. Development, synthetic biology, and optogenetics. And Art and stuff.

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Reposted by Dirk Benzinger
James Briscoe @jamesbriscoe.bsky.social · 08/06/2026
Our latest: Minimal essential requirements for neural tube self-organisation How does a single cell give rise to a tissue with the right cell types in the right proportions? We deconstruct and rebuild a self-organising tissue from first principles A thread🧵 www.biorxiv.org/content/10.6...
biorxiv.org
Minimal essential requirements for neural tube self-organisation
The reliable generation of diverse cell types in precise proportions is essential for the formation of functional tissues during embryonic development. Three-dimensional organoid models derived from p...
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Reposted by Dirk Benzinger
James Briscoe @jamesbriscoe.bsky.social · 16/12/2025
Good to see the peer reviewed version of this published A chemo-optogenetic system for spatiotemporal control of gene expression We use it to: - Reconstruct SHH mediated neural tube patterning in vitro - Measure extracellular half-life of Shh www.cell.com/developmenta...
cell.com
Investigating morphogen and patterning dynamics with optogenetic control of morphogen production
Benzinger et al. develop a chemo-optogenetic system for precise spatiotemporal control of morphogen production in vitro. Using light-controlled Sonic hedgehog expression, they recapitulate neural tube...
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Reposted by Dirk Benzinger
Giulia Boezio @giulia-boezio.bsky.social · 26/10/2025
Thrilled to share my main postdoc work with @jamesbriscoe.bsky.social We used genomic barcoding + scRNAseq in chick & human embryos to reveal a lineage architecture that reshapes how we understand neural tube development & cell fate decisions 🧵👇 www.biorxiv.org/content/10.1...
biorxiv.org
Hierarchical lineage architecture of human and avian spinal cord revealed by single-cell genomic barcoding
The formation of neural circuits depends on the precise spatial and temporal organisation of neuronal populations during development. In the vertebrate spinal cord, progenitors are patterned into mole...
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Reposted by Dirk Benzinger
Sally Lowell @cellysally.bsky.social · 21/10/2025
The Possible vs. The Actual: can #GenerativeBiology reveal fundamental design principles of complex life? @philipcball.bsky.social closes #GenBio25 with a magnificent synthesis of the past two days of discussions, and guides us towards an agenda for the future of the field.
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Reposted by Dirk Benzinger
Sally Lowell @cellysally.bsky.social · 19/10/2025
We are looking forward to spending the next two days discussing INTERESTING THINGS at our workshop on Generative Biology: new approaches to study developmental design principles #GenBio25 Thanks to my excellent coorganisers @jcornwallscoones.bsky.social & @dbenzinger.bsky.social & all participants
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Reposted by Dirk Benzinger
Ollie Inge @oliveringe.bsky.social · 09/09/2025
1/7 Really happy to see my PhD work published in ✨Developmental Cell✨ today! We find human endoderm is specified by two developmental trajectories 🔀, and the choice between alternate routes is dictated by the combinatorial BMP4/Activin signalling. www.cell.com/developmenta...
cell.com
Combinatorial BMP4 and activin direct the choice between alternate routes to endoderm in a stem cell model of human gastrulation
Inge et al. show that human endoderm originates from two converging developmental routes with distinct dynamics and efficiencies yet similar developmental potential. Combinatorial activin and BMP4 sig...
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Dirk Benzinger @dbenzinger.bsky.social · 27/08/2025
Super excited that our latest work is out! We use optogenetics to dynamically control and study the formation of morphogen gradients. If you are interested in optogenetic tools and/or how cells shape and process extracellular signals, check out @jamesbriscoe.bsky.social's thread and the paper.
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Reposted by Dirk Benzinger
jared toettcher @toettch.bsky.social · 25/03/2025
I'm so happy to report that our preprint on light-induced collective cell migration has now been published in Cell Systems! This project was a lot of fun and will be the basis for a lot of our ongoing & future work.
cell.com
Large-scale control over collective cell migration using light-activated epidermal growth factor receptors
Programmable control over tissue movement is a fundamental challenge for tissue engineering and wound healing. Suh, Thornton, et al. discovered that a light-controlled EGF receptor controls long-range...
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Dirk Benzinger @dbenzinger.bsky.social · 12/03/2025
It has been fun being part of this. Interested in design rules governing cis-regulatory element activity and how they can be used to engineer gene expression? Check out Jake’s thread/paper!
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Reposted by Dirk Benzinger
James Briscoe @jamesbriscoe.bsky.social · 19/12/2024
Our latest: how to generate the notochord "Timely TGFβ signalling inhibition induces notochord" A thread: www.nature.com/articles/s41...
nature.com
Timely TGFβ signalling inhibition induces notochord - Nature
Through analysis of developing chick embryos and in vitro differentiation of embryonic stem cells, a study develops a method to generate a model of the human trunk with a notochord.
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