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Daniel Read

@danread.bsky.social
836 followers 1.3K following 1 posts

Molecular Ecologist researching freshwater microbiology, AMR, eDNA and biodiversity. UK Centre for Ecology & Hydrology (UKCEH).

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Reposted by Daniel Read
water@leeds - University of Leeds @water.leeds.ac.uk · 24/06/2026
📢UK #Freshwater Quality Programme #webinar: 15 July Dr Daniel Read @danread.bsky.social @ukceh.bsky.social presents update on PACIFIC project 'Pathways of chemicals into freshwaters and their ecological impacts' More: shorturl.at/yPrPy @prof-joseph-holden.bsky.social @pippachapmn.bsky.social
Illustration poster for the Freshwater Quality research programme in the UK. Featuring a healthy landscape of water and trees contrasted with a dry barren land.
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 05/06/2026
Further, @jenmgshe.bsky.social published her working running the National Honey Monitoring Scheme which uses #eDNA for biomonitoring 🍯 @lindsaynewbold.bsky.social @laurens-colours.bsky.social @buzzingbennett.bsky.social @danread.bsky.social journals.plos.org/plosone/arti...
journals.plos.org
Using honeybees for national scale long-term eDNA biomonitoring
As central place foragers, bees integrate information over large spatial scales on diet and pollutant exposure, offering insights into environmental impacts on their populations. Data from bee biomoni...
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 05/06/2026
Tim Goodall led work titled "taxonomic filtering accompanies functional expansion during long-term soil restoration" 🌱🦠🧬 @susherevans.bsky.social @brionyjones.bsky.social @amycthorpe.bsky.social @danread.bsky.social academic.oup.com/ismej/articl...
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 05/06/2026
@hollytipper.bsky.social & @rachelapayne.bsky.social led work investigating global trends in the literature on #AMR 🧫🦠in wild animals 🦆🦌🦊 and plants 🌿 @istanton.bsky.social @jenmgshe.bsky.social @oxonandrew.bsky.social @danread.bsky.social www.nature.com/articles/s44...
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 27/03/2026
Check out our latest paper, work led by @amycthorpe.bsky.social titled "River Microbiomes as Sentinels of National-Scale Freshwater Ecosystems" 🦠🌊 onlinelibrary.wiley.com/doi/full/10.... @susheelbusi.bsky.social @lindsaynewbold.bsky.social @joedtaylor.bsky.social @danread.bsky.social
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 19/03/2026
🧵 @hollytipper.bsky.social & @danread.bsky.social have a new paper out titled "Spatiotemporal profiling of antimicrobial agents during wastewater treatment – a national study" with Adegbenro Daso and Barbara Kasprzyk-Hordern Check it out ➡️ www.sciencedirect.com/science/arti... @ukceh.bsky.social
sciencedirect.com
Spatiotemporal profiling of antimicrobial agents during wastewater treatment – a national study
Effective wastewater treatment is critical for public health; however, the persistence of antimicrobial chemicals within these systems presents challe…
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Isobel Stanton @istanton.bsky.social · 09/03/2026
Our latest paper has just been published in Environment International! Check it out here ➡️ www.sciencedirect.com/science/arti... @ukceh.bsky.social @ukceh-moleco.bsky.social
sciencedirect.com
Predicting antifungal concentrations that select for resistance: an enhanced approach to establish environmental thresholds
Antifungal resistance (AFR) is an emerging threat. Understanding the concentrations at which antifungals select for resistance is critical for guiding…
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 02/03/2026
Sir Andrew Mackenzie, Chair of @ukri.org also visited our Wallingford laboratories this week and heard an overview of our National Honey Monitoring Scheme 🍯 & other eDNA work 🧬 @dceiver.bsky.social @danread.bsky.social
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UKCEH Molecular Ecology @ukceh-moleco.bsky.social · 02/03/2026
Finally, Tim Goodall, @brionyjones.bsky.social, @amycthorpe.bsky.social, @danread.bsky.social & @susheelbusi.bsky.social have a new preprint out titled: "Environmental filtering shapes divergent bacterial strategies and genomic traits across soil niches" 🦠🌱⬇️ www.biorxiv.org/content/10.6...
biorxiv.org
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BES Community Science Group @bes-communitysci.bsky.social · 23/02/2026
NEW Guide to DNA-based monitoring with community science @ukdnawg.bsky.social 💧 CS x DNA examples 👩🏽‍🦰 Involving volunteers 🔢 Project design 💡 Future directions ✍️ Resources 👉 tinyurl.com/2cn9zdbx @laurens-colours.bsky.social @lynseyrharper.bsky.social @ukeof.bsky.social @naturalengland.bsky.social
tinyurl.com
New UKEOF guide to using DNA-based monitoring with citizen science | UKEOF
We are delighted to announce the recent release of the first UKDNA-WG briefing note. This guide to DNA-based monitoring with citizen science was written by Lauren Cook (UK Centre for Ecology &…
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Amy Thorpe @amycthorpe.bsky.social · 27/11/2025
Our findings highlight the importance of river biofilms and provide a foundation for understanding their role in ecosystem health & resilience 🌊🌱 Thanks to my co-authors @susheelbusi.bsky.social, @danread.bsky.social, Jono Warren, Laura Hunt, Kerry Walsh. @ukceh.bsky.social & Environment Agency
nature.com
National-scale biogeography and function of river and stream bacterial biofilm communities - Nature Communications
Here, the authors conduct a metagenomic-based study of England’s rivers to show that biofilm bacteria are taxonomically and functionally diverse and are key to biogeochemical cycling, highlighting the...
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Martin Genner @mgenner.bsky.social · 12/11/2025
JOB OPPORTUNITY! Senior Researcher in Freshwater Environmental Genetics to work with us on the ERC REFRESH Programme studying the role of dissolved organic matter in freshwater ecosystems shorturl.at/zOajg @pennyjohnes.bsky.social @bristoluni.bsky.social @ercrefresh.bsky.social @danread.bsky.social
A UK chalk stream with the water crowfoot in flow, and hemlock water dropwort on the bank.One of the ERC REFRESH experiments underway. Experimental mesocosms are being used to study the biological responses to different forms of dissolved organic matter.UK freshwater streams are rich in biological diversity, including damselflies such as this beautiful demoiselle
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Susheel Bhanu Busi @susheelbusi.bsky.social · 29/09/2025
🚨 New #OpenAccess paper in #Environmental #DNA! 🚨 Led by #TimGoodall @ukceh.bsky.social with @danread.bsky.social we tested whether #soil #eDNA metabarcoding can capture plant #biodiversity & vegetation cover across the UK 🌱 🔗 doi.org/10.1002/edn3...
doi.org
Deciphering Landscape‐Scale Plant Cover and Biodiversity From Soil eDNA
Biodiversity surveys are essential but challenging to conduct at scale, prompting this study to evaluate soil-extracted eDNA as a proxy for traditional field-based surveys for describing plant commun...
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Rich Cross @richardkcross.bsky.social · 04/08/2025
To find out more about what @ukceh.bsky.social are up to at #INC5 #GlobalPlasticsTreaty see our latest blog below👇 I'm particularly interested in how existing #plasticpollution is considered and what happens next around implementation and effectiveness #microplastics www.ceh.ac.uk/news-and-med...
ceh.ac.uk
Advancing science to end plastic pollution
A UKCEH delegation is attending the final session of the Intergovernmental Negotiating Committee for the Global Plastics Treaty from 5-14 August in Geneva, Switzerland.
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Sam Harrison @samharrison.science · 05/08/2025
#INC5.2 is go!
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/05/2025
And we are go! The @royalsociety.org’s Sarah Giles kicks off our annual conference by summarising the eDNA policy explainer cowritten by UKDNAWG members @andynisbet.bsky.social @danread.bsky.social and @lorihandley.bsky.social and the RS
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Lynsey Harper @lynseyrharper.bsky.social · 25/03/2025
Fantastic to see the State of Windermere in 2024 report and Windermere Integrated Science Plan (WISP) published! Over 90 yrs of information and data on Windermere and its catchment summarised during my time with @freshwaterbio.bsky.social, which was only possible with the help of many people! 1/4
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The Royal Society @royalsociety.org · 11/03/2025
The Environmental DNA explainer explores potential applications for monitoring eDNA as well as a number of ethical, legal, data and infrastructure challenges that must be resolved to harness these opportunities. Find out more with our Q&A and case studies: royalsociety.org/news-resourc...
royalsociety.org
Environmental DNA | Royal Society
This Royal Society programme of work aims to raise awareness of the breadth of current and emerging applications within this fast-moving area of science.
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The Royal Society @royalsociety.org · 11/03/2025
DNA fragments in air, soil and water, known as environmental or eDNA, could be used in crime investigations, to monitor pollution and enviromental quality, to warn of biosecurity threats and more according to a new report from the Royal Society. royalsociety.org/news/2025/03...
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 11/03/2025
The launch coincides with the @royalsociety.org hosting our 2025 annual conference! Tomorrow is the deadline for abstract submission! Submit and register here ukeof.org.uk/our-work/ukd...
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Bluesky
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 11/03/2025
The explainer was written by UKDNAWG steering committee chair and members @andynisbet.bsky.social ynisbet.bsky.social @lorihandley.bsky.social dley.bsky.social and @danread.bsky.social ead.bsky.social together with @robogden.bsky.social and led by Sarah Giles from the @royalsociety.org
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 11/03/2025
Are you a policy maker or end-user, interested to know more about #eDNA based methods for monitoring of #biodiversity, #pathogens or in #forensics? If so, check out this policy explainer published today by the @royalsociety.org royalsociety.org/news-resourc...
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Red-ALERT CDT @redalertcdt.bsky.social · 18/02/2025
It's been an exciting year so far for the Red-ALERT CDT, with co-creation research collaborations across Gov agencies, water companies, non-profit organisations, industry and many more; welcoming our first cohort of students & hosting 2 training courses at University of Bath & Cardiff University...
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
The UK DNA Working Group aims to: 1) Link researchers, developers of DNA-based monitoring methods, and end users to ensure that activities are focussed on meeting priority information needs and that knowledge is transferred effectively within the wider community...
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
2) Support and encourage best practice and the development of standards for using DNA-based monitoring ... 3) Engage and work collaboratively with others nationally and internationally, seeking opportunities to influence research, share best practice and facilitate re-use of samples and data ...
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
4) Increase awareness of where and how DNA-based methods can help improve the effectiveness of environmental monitoring.
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
We are delighted to announce that the 11th #ukdnawg conference will be hosted by the @royalsociety.org London on 13-14th May 2025. For more information, and to register, follow the links from ukeof.org.uk/our-work/ukdna 🧬 #eDNA #biodiversity
ukeof.org.uk
UK DNA Working Group | UKEOF
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
1/3 Hello Bluesky! We are delighted to launch the shiny new @ukeof.bsky.social UK DNA Working Group Blue Sky Account! 🧬🐟🦈🌱🦫🍄🦆🪳🐸
ukeof.org.uk
UK DNA Working Group | UKEOF
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
2/3 The UK DNA Working Group #ukdnawg was launched in 2014 to facilitate dialogue and collaboration in the use of #eDNA for environmental monitoring by providing a forum for government agencies, researchers and other stakeholders to discuss priorities and emerging developments.
ukeof.org.uk
UK DNA Working Group | UKEOF
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UKEOF UKDNA Working Group @ukdnawg.bsky.social · 13/02/2025
3/3 We are a working group of the UK Environmental Observation Framework (#UKEOF). For more information about who we are and what we do, see our website ukeof.org.uk/our-work/ukdna
ukeof.org.uk
UK DNA Working Group | UKEOF
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River Ecosystems Laboratory @EPFL @riverepfl.bsky.social · 05/01/2025
What a start into the New Year👋! Yet another very cool METALP paper out - by Luis and Nic! New insights into synchronicity of DOC in high-mountain streams. Great conceptual thinking, stats and lots and lots of sensor data.....Enjoy! aslopubs.onlinelibrary.wiley.com/doi/full/10....
aslopubs.onlinelibrary.wiley.com
Synchrony dynamics of dissolved organic carbon in high‐mountain streams: Insights into scale‐dependent processes
In high-mountain landscapes, organic carbon (OC) is often limited and heterogeneously stored in poorly developed soils, snow, ground ice, and glaciers. Climate change influences the dynamics of OC mo....
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River Ecosystems Laboratory @EPFL @riverepfl.bsky.social · 05/01/2025
...more from the Vanishing Glaciers project, also with @susheelbusi.bsky.social @layeb.bsky.social: Greg's awesome metagenomic insights into the glacier-fed stream microbiome are out now. What a bewildering biofilm mode of life up there☺️! Well done all! www.nature.com/articles/s41...
nature.com
Mapping the metagenomic diversity of the multi-kingdom glacier-fed stream microbiome - Nature Microbiology
Thousands of metagenome-assembled genomes from the Vanishing Glaciers project showcase the interactions between prokaryotes, algae, fungi and viruses in glacier-fed stream environments.
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River Ecosystems Laboratory @EPFL @riverepfl.bsky.social · 05/01/2025
New insights into the microbiome of the world's glacier-fed streams. Amazing work by @layeb.bsky.social and @susheelbusi.bsky.social and many others! Thanks all friends and colleagues around the globe! Also the great Nomis Foundation for continuous support! www.nature.com/articles/s41...
nature.com
Diversity and biogeography of the bacterial microbiome in glacier-fed streams - Nature
Leveraging metabarcoding and metagenomics, a survey of bacteria in the benthic microbiome across 152 glacier-fed streams (GFSs) provides a global reference for future climate-change microbiology studi...
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Robin Rohwer @robinrohwer.bsky.social · 03/01/2025
Thanks to Marc Airhart for the lovely #SciComm about my latest paper. It's awesome to see a professional make your work accessible 🖥️🧬🧪 @texasscience.bsky.social
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Brett Baker @archaeal.bsky.social · 03/01/2025
After 24 years of work, I’m thrilled to announce the TYMEFLIES dataset, which comprises metagenomes from Lake Mendota (Madison, WI), collected roughly every 10 days (471 samples) for 20 years! @quendi.bsky.social @robinrohwer.bsky.social rdcu.be/d5put A thread…
rdcu.be
Two decades of bacterial ecology and evolution in a freshwater lake
Nature Microbiology - A 471-metagenome time series from Lake Mendota in Wisconsin, USA, reveals seasonal and decadal shifts in bacterial functional and ecological dynamics, especially in response...
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Lori Lawson Handley @lorihandley.bsky.social · 30/12/2024
Timely and important paper on guidelines for workflows and reporting of #eDNA #metabarcoding data. Hugely relevant to ongoing discussions within #ukeof #ukdnawg about standards and data mobilisation @lynseyrharper.bsky.social @danread.bsky.social
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Alastair Chisholm @alastairchisholm.bsky.social · 20/12/2024
There's understandably a lot of anger over big increases in water bills. Unfortunately they're necessary. Water infrastructure investment just hasn't kept pace with pressures. BUT, they undoubtedly shouldn't have had to increase as they now have. Short 🧵 www.independent.co.uk/news/uk/ange...
independent.co.uk
Anger over water bills hike which campaigners say will not solve sewage crisis
Clean water campaigners describe settlement for water companies as a ‘travesty’ and ‘nightmare before Christmas’ for customers.
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Julie Robidart @robidart.bsky.social · 23/12/2024
Interested in new tools to understand our changing ocean? Come work with us! A rare opportunity is open @noc.ac.uk @biogeosensing.bsky.social for a senior software engineer to lead new design as part of a tightly-integrated team. careers.noc.ac.uk/vacancy/seni...
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Ameet Pinto @watermicrobe.bsky.social · 18/12/2024
Very excited to share this new pre-print led by Benjamin Gincley & Farhan Khan. This is a beauty!! I’m biased ofcourse! www.biorxiv.org/content/10.1...
biorxiv.org
Morphotype-Resolved Characterization of Microalgal Communities in a Nutrient Recovery Process with ARTiMiS Flow Imaging Microscopy
Microalgae-driven nutrient recovery represents a promising technology to reduce effluent phosphorus while simultaneously generating biomass that can be valorized to offset treatment costs. As full-sca...
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Holly Tipper @hollytipper.bsky.social · 17/12/2024
🚨Currently hiring!🚨 Looking for a new challenge? We are hiring a Molecular Biology Technician and a Molecular Ecologist, based at our @ukceh.bsky.social Wallingford site. Follow the links to find out more! 🦠🧬 ceh.wd3.myworkdayjobs.com/en-US/CEH_Ca... ceh.wd3.myworkdayjobs.com/en-US/CEH_Ca...
ceh.wd3.myworkdayjobs.com
Molecular Biology Technician
Salary - £30,684 to £32,563 Fully site based. 18-Month Fixed Term Contract and Full-Time (37 hours per week) Closing date for applications, Fri, 3 Jan 2024. We reserve the right to close this advert e...
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Lynsey Harper @lynseyrharper.bsky.social · 17/12/2024
☎️ calling all budding #freshwater or #molecular ecologists! Great #PhD with me, Fred Windsor, @danread.bsky.social + @jordancuff.bsky.social looking at impact of stressors + climate change on #ponds with #eDNA #metabarcoding to inform conservation + health assessment Link below - apply by 13 Jan!
media.tenor.com
a close up of an otter wearing a leash on a leash .
ALT: a close up of an otter wearing a leash on a leash .
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A. Murat Eren (Meren) @merenbey.bsky.social · 16/12/2024
We are very happy to announce a free-to-attend #anvio workshop and ECR symposium in Oldenburg to discuss integrated microbial 'omics and learn applications of anvi'o. More information and application link (application deadline is Jan 10): anvio.org/workshops/20... Please apply and/or circulate 😇
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Brian J. Enquist @bjenquist.bsky.social · 13/12/2024
Important piece by Gittleman - “It’s impossible to separate human health from health of the natural world. Ecology is the unifying science that integrates knowledge..[the] One Health approach is unlimited, exciting, & necessary for the health of life on our planet” www.pnas.org/doi/10.1073/... 🧪🌎🌐🌾
Photo of the front page of the paper - showing animals and plants and people encircled across the globe - There needs to be more emphasis on the ecological component of One Health as we consider the problems of biodiversity loss, climate extremes, habitat fragmentation, and emerging disease. Image credit: Shutterstock/BeataGFX.
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IWA MEWE 2025 @mewe2025.bsky.social · 03/12/2024
The deadline for abstract submissions to #mewe11 is two weeks from now (Dec 15). Click on "Call for papers". Early registration is also live. Click on "Registration". Register early and save $$. Visa letter needed? Complete registration & submit your abstract first. mewe11.ce.gatech.edu
mewe11.ce.gatech.edu
IWA MEWE-11 CONFERENCE – Managing Microbiomes: From Ecology to Engineering
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Cameron Thrash @jcamthrash.bsky.social · 04/12/2024
Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesised proteins academic.oup.com/ismecommun/a... #jcampubs
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Franciska de Vries 🟥 @frantecol.bsky.social · 28/11/2024
Science takes time - a lot of time. Time that is more and more difficult to make available because of increased workloads. Time that exceeds the temporary contracts of postdocs and PhDs. I'll illustrate this using our paper published in Nature yesterday. 🧵 (1/x) www.nature.com/articles/s41...
nature.com
Soil microbiomes show consistent and predictable responses to extreme events - Nature
Soils from 30 grasslands across Europe were subjected to 4 contrasting extreme climatic events under drought, flood, freezing and heat conditions, with the results suggesting that soil microbiomes fro...
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Paulina Arancibia @pauliarancibia.bsky.social · 30/11/2024
I created this stater pack with women in ecology and evolution. If you want to be added you can comment or DM me, but also please suggest the names of those I am missing 🧪🌎🌐 go.bsky.app/8jFH7cS
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Franciska de Vries 🟥 @frantecol.bsky.social · 27/11/2024
It’s out!! We subjected soils from 30 different locations across Europe to extreme events and found that soil fungal and bacterial communities showed consistent responses that could be predicted from their origin! With @knightjar.bsky.social and many collaborators! www.nature.com/articles/s41...
nature.com
Soil microbiomes show consistent and predictable responses to extreme events - Nature
Soils from 30 grasslands across Europe were subjected to 4 contrasting extreme climatic events under drought, flood, freezing and heat conditions, with the results suggesting that soil microbiomes fro...
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IPBES @ipbes.net · 24/11/2024
“Experts and scientists are migrating to Bluesky in record numbers.” Welcome if you’re new (and if you’re not, please help by reposting) - here’s a starter pack for the #biodiversity science-policy community: go.bsky.app/LjV86zg
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Prof. Elizabeth Clare @profbatgirl.bsky.social · 19/11/2024
To reach new users if you have an interest in #eDNA #environmentalDNA as a scientist or user, please consider completing our survey. We are engaged in funded research on community perspectives on eDNA, ethics, risk and potential forms.office.com/r/P6R57BAbZq #academicSkY #womenInSTEM 🧪
forms.office.com
Microsoft Forms
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