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Dan Liu

@danliu1.bsky.social
55 followers 79 following 23 posts

Computational biologist | Bioinformatics, virus-host interactions, LLMs 🦠 💻

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Reposted by Dan Liu
Xiaowei Jiang @johnjxw.bsky.social · 21/11/2025
It works as we last tried sequences from an unreleased glycoprotein-host receptor complex, and it predicted a positive interaction score!
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Dan Liu @danliu1.bsky.social · 28/10/2025
Our PLM-interact is out in Nature Communications! We show that jointly encoding protein pairs using protein language models improves protein–protein interaction prediction performance and enables fine-tuning to predict mutation effects in human PPIs. www.nature.com/articles/s41...
nature.com
PLM-interact: extending protein language models to predict protein-protein interactions - Nature Communications
Protein structure can be predicted from amino acid sequences with unprecedented accuracy, yet the prediction of protein–protein interactions remains a challenge. Here, authors present a sequence-based...
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