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Cory Simon

@corymsimon.bsky.social
2K followers 735 following 112 posts

applying math, computation, and machine learning to problems in chemical engineering | associate professor, Oregon State University | views mine simonensemble.github.io

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Cory Simon @corymsimon.bsky.social · 10/04/2026
🍷 new preprint on reverse-engineering a wine blend! feedback wanted. ❓given a wine blend and samples of each pure-varietal wine that went into it, can we infer the unknown make-up of the blend based on chemical fingerprints? (~ a tutorial on total least squares.) 🔗 chemrxiv.org/doi/full/10....
reverse-engineering a wine blend.
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Cory Simon @corymsimon.bsky.social · 07/04/2026
check out our new paper on Bayesian experimental design for surfactant characterization! pubs.acs.org/doi/10.1021/...
pubs.acs.org
Adaptive, Bayesian Experimental Design to Efficiently Determine the Critical Micelle Concentration of a Surfactant
Surfactants are widely used for industrial applications, yet more environmentally friendly surfactants with enhanced properties are demanded. A key thermodynamic property governing the behavior of a surfactant in an aqueous solution is its critical micelle concentration (CMC). Below the CMC, increasing the surfactant concentration reduces the surface tension of the solution; above the CMC, the water–air interface becomes saturated with adsorbed surfactant, leading excess surfactant to self-assemble into micelles and the surface tension to plateau. Many physicochemical properties of a surfactant solution exhibit sharp changes at the CMC. The conventional experimental protocol to determine the CMC of a surfactant is labor-intensive and time-consuming: (1) prepare many surfactant solutions spanning a wide concentration range and then (2) measure the surface tension of each solution. Herein, we adopt Bayesian experimental design (BED) to determine the CMC of a surfactant more efficiently─even without prior knowledge of its order of magnitude. BED follows an experiment-model-design feedback loop: (1) prepare a surfactant solution and measure its surface tension; (2) use all surface tension data thus far to obtain a posterior distribution over thermodynamic models of the surface tension isotherm of the surfactant; and (3) pick the surfactant concentration for the next experiment to maximize expected information gain about the CMC. We show that BED efficiently gathers information about the CMC using two surfactants (octyl-β-d-thioglucopyranoside and Triton X-100) as test cases. Broadly, BED can reduce the time, effort, cost, and chemical waste to determine the CMC of surfactants and drive an autonomous laboratory for surfactant discovery and characterization.
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Reposted by Cory Simon
The Guardian @theguardian.com · 21/02/2026
‘Reimagining matter’: Nobel laureate invents machine that harvests water from dry air
theguardian.com
‘Reimagining matter’: Nobel laureate invents machine that harvests water from dry air
Omar Yaghi’s invention uses ambient thermal energy and can generate up to 1,000 litres of clean water every day A Nobel laureate’s environmentally friendly invention that provides clean water if central supplies are knocked out by a hurricane or drought, could be a life saver for vulnerable islands, its founder says. The invention, by the chemist Prof Omar Yaghi, uses a type of science called reticular chemistry to create molecularly engineered materials, which can extract moisture from the air and harvest water even in arid and desert conditions. Continue reading...
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Cory Simon @corymsimon.bsky.social · 06/01/2026
check out our new paper on adaptively allocating Monte Carlo samples of MOF-adsorbate configurations for efficient, multi-fidelity computational screening of MOFs for an adsorption property using molecular simulations. pubs.acs.org/doi/full/10....
pubs.acs.org
Adaptive Allocation of Monte Carlo Samples for Efficient, Multifidelity Computational Screening of Metal–Organic Frameworks
For applications in gas sensing, purification, and capture, we often wish to search a large set of metal–organic frameworks (MOFs) for the top-K in terms of their Henry coefficients for an adsorbate. A molecular simulation to predict the Henry coefficient of a MOF constitutes a Monte Carlo integration where each sample consists of inserting an adsorbate in the MOF at a random position, orientation, and configuration, then calculating the MOF–adsorbate interaction energy. Our idea is to leverage top-K arm identification algorithms, developed for the multi-armed bandit problem in reinforcement learning, to sequentially and adaptively allocate adsorbate insertions among the MOFs, in a data-driven manner, to obtain the most accurate top-K subset under a fixed insertion budget. By analogy, each MOF is a slot machine in a casino that, upon pulling its arm (inserting an adsorbate), offers a stochastic reward (a noisy estimate of its Henry coefficient) sampled from a static, unknown probability distribution. Each adaptive allocation algorithm (1) proceeds in a feedback loop of (i) allocate adsorbate insertions to MOF(s), (ii) update the running estimates of the Henry coefficients of the MOF(s), then (iii) judiciously allocate adsorbate insertions to the next MOF(s); (2) sequentially dials-up the fidelities of ongoing molecular simulations in the MOFs, giving a multifidelity computational screening; and (3) circumvents the need to hand-craft structural or chemical features of the MOFs for decision making. As a case study, we implement, benchmark, and analyze the sequential halving, successive accepts and rejects, and narrowing exploration (our proposed heuristic) algorithms to adaptively allocate xenon insertions to screen a set of ca. 300 MOFs for the top-K Xe Henry coefficient subset over differing insertion budgets. Provided with a sufficient budget, we find that these adaptive insertion algorithms can significantly reduce (by a factor of 2–3) the simple regret (sum of true minus empirical top-K true Henry coefficients) and error in the top-K subset of MOFs output by a computational screening. By another metric, adaptive insertion allocation provided a ca. 60% discount on the computational cost to identify the top-K MOFs with less than 5% error. We thereby demonstrate that top-K arm identification algorithms may generally be useful for more efficiently screening materials for various properties via Monte Carlo molecular simulations. This efficiency improvement is especially important when adopting more computationally expensive, sophisticated force fields or even ab initio calculations for the potential energy of configurations to lend higher-fidelity screenings.
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Cory Simon @corymsimon.bsky.social · 03/12/2025
the singular value decomposition is my favorite matrix factorization by far. if I were to get a tattoo, it would be “A = UΣVᵀ". cliché for a professor teaching SVD, but in my grad-level “math for chemical engineers” class, I compressed a photo of my dog using the SVD in Julia. 🐶
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Cory Simon @corymsimon.bsky.social · 24/11/2025
"it is no exaggeration to say that symmetric matrices are the most important matrices the world will ever see." "if symmetry makes a matrix important, [the] extra property [of having all positive eigenvalues] makes it truly special." - Gilbert Strang
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Cory Simon @corymsimon.bsky.social · 19/11/2025
a sensor array of conductive COFs, made by Prof. Kat Mirica's group at Dartmouth, can distinguish between NO, CO, NH₃, and H₂S. cool for us to contribute with PCA and k-NN. 😀 pubs.acs.org/doi/10.1021/...
pubs.acs.org
Conductive Covalent Organic Frameworks as Chemiresistive Sensor Arrays for the Detection and Differentiation of Gasotransmitters
This paper describes a chemiresistive sensor array using four structurally analogous, but chemically distinct, conductive covalent organic frameworks (COFs) (M-COF-DC-8, M = Fe, Co, Ni, and Cu) capable of detecting and differentiating four important gaseous analytes: nitric oxide (NO), carbon monoxide (CO), hydrogen sulfide (H2S), and ammonia (NH3). The COFs were synthesized from the condensation of 2,3,9,10,16,17,23,24-octaamino-metallophthalocyanine precursors with pyrenetetraone linkers resulting in chemically robust and electrically conductive materials. Chemiresistive sensing experiments, together with machine learning to parse the response pattern of the sensor array, show that the M-COF-DC-8 (M = Fe, Co, Ni, Cu) materials can detect and differentiate this suite of oxidizing and reducing gases at parts-per-million concentrations, with theoretical limits of detection (LOD) in the parts-per-billion range in dry N2. Importantly, the COF array containing M-COF-DC-8 (M = Co, Ni, Cu) retains its ability to detect and differentiate these analytes in air and humidity under low power consumption. Spectroscopic investigations reveal that the synthetic control over the identity of the metallophthalocyanine core efficiently tunes material–analyte interactions and, therefore, emergent device performance. The use of highly tunable COFs as the active material in sensor arrays enables low-power, sensitive, and real-time gas detection with future applications in healthcare and personal protection.
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Cory Simon @corymsimon.bsky.social · 19/11/2025
after eight years as a ChemE prof., I had a fantastic day when my PhD advisor Prof. Berend Smit visited Oregon State University! 😁
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Cory Simon @corymsimon.bsky.social · 12/11/2025
💦 in our latest research (with @chemashlee.bsky.social), we framed an optimization problem (a linear program) for designing bespoke mixtures of metal-organic frameworks (MOFs) for robust, passive atmospheric water harvesting. pubs.acs.org/doi/10.1021/...
pubs.acs.org
Optimizing Mixtures of Metal–Organic Frameworks for Robust and Bespoke Passive Atmospheric Water Harvesting
Atmospheric water harvesting (AWH) is a method to obtain clean water in remote or underdeveloped regions including, but not limited to, those with an arid or desert climate. For passive (i.e., relying...
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Cory Simon @corymsimon.bsky.social · 13/10/2025
my PhD student G. Fabusola trained and tested machine learning algorithms to parse the response pattern of a conductive-MOF sensor array from K. Mirica's group! 👃 the electronic nose could detect and differentiate toxic gases and H₂S/SO₂ mixtures at ppm-levels. pubs.acs.org/doi/10.1021/...
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Reposted by Cory Simon
MOF Papers @mofpapers.bsky.social · 08/10/2025
We interrupt our regular programming to announce…
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Cory Simon @corymsimon.bsky.social · 22/09/2025
in a “it’s a small world” moment, I ran into @bessvlai.bsky.social at Case Western Reserve University in Cleveland, OH. she was giving a seminar in the chemistry department; me, in chemical engineering. great to see you, Bess!
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Cory Simon @corymsimon.bsky.social · 02/09/2025
new preprint, "adaptive allocation of Monte Carlo samples for efficient, multi-fidelity computational screening of metal-organic frameworks" feedback welcome! chemrxiv.org/engage/chemr...
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Cory Simon @corymsimon.bsky.social · 23/07/2025
"guidelines for multi-fidelity Bayesian optimization of molecules and materials" our News & Views article in Nature Computational Science. rdcu.be/ext6h
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Reposted by Cory Simon
Steven Strogatz @stevenstrogatz.com · 30/06/2025
My latest for @nytimes.com -- please repost so your followers can see this for free. www.nytimes.com/interactive/...
nytimes.com
How a Puzzle About Fractions Got Brain Scans Rolling (Gift Article)
A story of bowling pins, patterns and medical miracles.
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Cory Simon @corymsimon.bsky.social · 30/05/2025
🍷solving a linear program for optimal wine blending in Julia simonensemble.github.io/pluto_nbs/wi...
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Cory Simon @corymsimon.bsky.social · 10/05/2025
a post-fermentation blend of *nine* white wines from Oregon! and a linear program for wine blending.
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Cory Simon @corymsimon.bsky.social · 15/04/2025
🚰 "Optimizing mixtures of metal–organic frameworks for robust and bespoke passive atmospheric water harvesting" by C. Harriman, Q. Ke, T. Vlugt, A. Howarth, C. Simon. feedback welcome on our ChemRxiv preprint: chemrxiv.org/engage/chemr...
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Cory Simon @corymsimon.bsky.social · 13/04/2025
fascinating: atmospheric water harvesting by indigenous populations on the Canary Islands long ago. Kennedy & Boreyko. “Bio‐inspired fog harvesting meshes: a review”. Advanced Functional Materials. 2023.
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Reposted by Cory Simon
Zhichang Liu @zhichangliu.bsky.social · 13/04/2025
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Cory Simon @corymsimon.bsky.social · 12/04/2025
finally got to meet Mark Allendorf from Sandia National Lab! currently co-director of the DOE Hydrogen Materials – Advanced Research Consortium (HyMARC). been following his work since grad school.
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Cory Simon @corymsimon.bsky.social · 05/04/2025
with @cgbischak.bsky.social and @shijingsun.bsky.social at the Automating Chemical Labs Scialog in Tucson! 🌵
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Cory Simon @corymsimon.bsky.social · 31/03/2025
me with the shipwreck of Peter Iredale on the Oregon coast. happened in 1906. everyone survived.
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Cory Simon @corymsimon.bsky.social · 17/03/2025
💦 our recent paper, published in Chemical Engineering Science: can we infer the cross-sectional area profile of an unseen solid contained in a draining tank from its liquid level dynamics? 🔙 we employ Bayesian statistical inversion to do so. www.sciencedirect.com/science/arti...
sciencedirect.com
Inferring the cross-sectional area profile of an unseen solid in a draining tank from liquid level dynamics
We aim to reconstruct the horizontal cross-sectional area profile of an exogenous, heavy, unseen solid contained in a tank from measurements of the li…
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Cory Simon @corymsimon.bsky.social · 12/03/2025
(inverse problem for my class:) 🏭 suppose: 1. a monitoring station at a lake measures the concentration of a pollutant every two hours. 2. a factory injected pollutant into a river upstream. from the monitoring station's time series data, infer when and how much the factory polluted the river.
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Cory Simon @corymsimon.bsky.social · 09/03/2025
🎥 Chunking Express (1994) > somehow I've become very cautious. when I put on a raincoat, I put on sunglasses too. who knows when it will rain, or when it will turn out sunny?
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Cory Simon @corymsimon.bsky.social · 06/03/2025
so this cancer drug Taxol was discovered from the bark of this Pacific yew tree that grows naturally in Oregon! will be on the lookout for one. pmc.ncbi.nlm.nih.gov/articles/PMC...
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Cory Simon @corymsimon.bsky.social · 06/03/2025
a cool and beautiful flower that turns from opaque white to translucent when exposed to water. wonder if this material/chemistry has some application (e.g. humidity sensing). www.thisiscolossal.com/2015/07/skel...
thisiscolossal.com
The "Skeleton Flower" Turns From White to Translucent When Exposed to Water
The Diphelleia grayi or “Skeleton Flower” is finally a reason to look forward to rainy days. This rare flower transforms into a translucent beauty [its skeletal form] when exposed to water, its white ...
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Cory Simon @corymsimon.bsky.social · 06/03/2025
Edward Hopper Soir Bleu 1914 > no one is like anybody else. everybody is separated from everybody else. [...] one is always searching for a meaning somewhere else, in a costume or in a prostitute or in a drink or in a cigarette or in a party. - Rick Brettell
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Cory Simon @corymsimon.bsky.social · 05/03/2025
celebrated Oslo's sixth birthday yesterday! 🎉
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Cory Simon @corymsimon.bsky.social · 27/02/2025
Dantzig rejected Berkeley's offer for a faculty position and returned to the Air Force. 😆
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Reposted by Cory Simon
David Ho @davidho.bsky.social · 15/02/2025
Explain to me like I’m 10 years old: Why would we use our limited renewable energy for carbon dioxide removal instead of using it to curtail the use of fossil fuels?
nytimes.com
Will There Be Enough Power to Remove Carbon From the Sky?
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Reposted by Cory Simon
Christian Hill @scipython.bsky.social · 05/01/2025
Iceberg dynamics in #Python with #Matplotlib scipython.com/blog/iceberg...
An annotated diagram of the forces on an iceberg out of equilibrium.
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Cory Simon @corymsimon.bsky.social · 11/02/2025
The Best Choice Problem: calculating the optimal stopping rule using Markov chain theory simonensemble.github.io/Secretary_Pr...
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Cory Simon @corymsimon.bsky.social · 09/02/2025
first day riding my new BMX bike (re-living my childhood)!
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Reposted by Cory Simon
Randall Snurr @randallsnurr.bsky.social · 28/01/2025
It was fun thinking about opportunities ahead for the field of chemical engineering for the first anniversary issue of @natchemeng.bsky.social rdcu.be/d7O59
rdcu.be
Exploring the potential landscape of chemical engineering science
Nature Chemical Engineering - As part of the first anniversary issue of Nature Chemical Engineering, we present a collection of opinions from 40 researchers within the field on what they think are...
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Cory Simon @corymsimon.bsky.social · 26/01/2025
interesting decision-making problem: where to park your car? I’m a “prudent parker” because I like walking and dislike searching for a parking space.
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Emma Payne @fedbybirds.bsky.social · 20/01/2025
How to spend today
David Lynch in sunglasses saying ‘I hope you are all having a lot of fun working on your favourite projects’
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Cory Simon @corymsimon.bsky.social · 15/01/2025
🎥 Wild at Heart (1990) directed by David Lynch > that ozone layer's disappearin'. one of these mornings, the sun's gonna come up and burn a hole clean through the planet like an electrical X-ray.
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Cory Simon @corymsimon.bsky.social · 09/01/2025
fantastic podcast with mathematician Steven Strogatz! particularly loved the discussion about boiling a dauntingly complex research problem into a simpler one we can actually solve. also +1 for the importance of playfulness for doing creative research.
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Cory Simon @corymsimon.bsky.social · 31/12/2024
✏️ No, You Don’t Get an A for Effort > We’ve gone from commending effort to treating it as an end in itself. > We’ve failed to remind [a generation of kids] that working hard doesn’t guarantee doing a good job. www.nytimes.com/2024/12/26/o...
nytimes.com
Opinion | No, You Don’t Get an A for Effort
High marks reward excellence, not grit.
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Itai Yanai @itaiyanai.bsky.social · 30/12/2024
I wish I heard this George Church podcast episode when I was a grad student! 1. You can change the world, as long as you don't care who gets credit. 2. The idea is not to never fail, it is to fail a million times a day. 3. Embrace the outlier! open.spotify.com/episode/1b1k... @night
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Cory Simon @corymsimon.bsky.social · 30/12/2024
📍Bend, Oregon
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Cory Simon @corymsimon.bsky.social · 26/12/2024
Christmas day hike in the misty forest. 📍Corvallis, Oregon
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Cory Simon @corymsimon.bsky.social · 25/12/2024
🎥 the Japanese film "All About Lily Chou-Chou" (2001) is unique, full of imagery, dark, and painful. it wounds and stabs (reference to Kafka).
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Cory Simon @corymsimon.bsky.social · 24/12/2024
🎥 The Lighthouse (2019): artistic black-and-white filming, poetic dialogue, highlights the effect of physical isolation on humans, perhaps themes of repressed sexuality and alcoholism, and symbolizes Prometheus in Greek mythology.
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Cory Simon @corymsimon.bsky.social · 23/12/2024
lookit my cool Markov chain. states L and W are absorbing states. states 1, ..., 5 are transient.
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Cory Simon @corymsimon.bsky.social · 22/12/2024
🛤️ Banks-Vernonia State Trail in Oregon is a 21 mi, paved trail that runs along an abandoned railroad. the railroad was constructed in 1913 and abandoned in 1973. seems the railway was primarily used to transfer logs and lumber. it's the first “rails-to-trails” park in Oregon.
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Cory Simon @corymsimon.bsky.social · 22/12/2024
🎥 Blood Simple (1984), an independent, neo-noir film, was the debut of the Coen brothers. it was rejected by all major studios. (currently 7.5/10 on IMDb, 94% on Rotten Tomatoes)
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Cory Simon @corymsimon.bsky.social · 20/12/2024
> 10,000 steps/day every month for two years in a row. thanks to my Samoyeds Oslo and Mochi!
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