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CleanFinder

@cleanfinder.bsky.social

Browser-native framework for comprehensive genome editing analysis. Deterministic. Scalable. Modality-agnostic. Illumina • ONT • Prime editing • Base editing 🔗 cleanfinder.org

Posts Replies Media

CleanFinder @cleanfinder.bsky.social · 25/06/2026

CleanFinder v1.2.0 is out! Added: Oligo KI Designer and Reverse Complement modules. Search sequences against human, mouse, rat, and zebrafish genomes, with a local human database for faster sequence retrieval. In addition, CF is now exon–intron aware!

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CleanFinder

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Reposted by CleanFinder

Alessandro Prigione @aleprigio.bsky.social · 27/05/2026

Fantastic work from @andrearossilab.bsky.social Rossi lab on the development of @cleanfinder.bsky.social for nuclear and mitochondrial genome editing application. Greatful that my lab have contributed!

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CleanFinder @cleanfinder.bsky.social · 22/05/2026

Excited to share that our work on CleanFinder is published in Trends in Biotechnology! 🎉 Analyzing complex allele mixtures across editing modalities and sequencing platforms is a major bottleneck. We developed CleanFinder to solve this. Read it here: www.sciencedirect.com/science/arti...

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CleanFinder @cleanfinder.bsky.social · 25/03/2026

🧪 96-well plate analysis with CleanFinder From FASTQ to full editing overview in seconds: • Plate-wide genotyping heatmap • Efficiency & frameshift • KO detection in diploid cells • Repairome signatures (NHEJ, MMEJ, HDR) In your browser. 🔗 cleanfinder.org #CRISPR #GenomeEditing #Bioinformatics

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CleanFinder @cleanfinder.bsky.social · 25/03/2026

🧬 CleanFinder Genome Viewer Visualize gene structure, gRNA cut sites, CDS and protein sequences, all in one place. Includes prediction of mRNA decay to better interpret editing outcomes. From sequence → function. 🔗 cleanfinder.org/genome_viewer #CRISPR #GenomeEditing #Bioinformatics

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CleanFinder @cleanfinder.bsky.social · 24/03/2026

🚀 Introducing CleanFinder A browser-native framework for comprehensive genome editing analysis. Deterministic, scalable, and designed to resolve complex editing outcomes across Illumina and ONT datasets, including PE and BE. Try it: cleanfinder.org #CRISPR #GenomeEditing #Bioinformatics

cleanfinder.org

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