iiinova — where your digital self keeps evolving

Reposted by chrismlangseth.bsky.social

Gonçalo Castelo-Branco @gocastelobranco.bsky.social · 13/03/2026

Check our latest preprint, Christoffer et al. at our lab developed KaroSpace, with which you can quickly generate a browser to explore your own or published spatial omics data! And here goes my soundtrack to spatial explorations, DJ-Kicks by Erlend Øye youtu.be/naKrdCozPUg?...

share.google

Google Search

0153

Reposted by chrismlangseth.bsky.social

bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 12/03/2026

KaroSpace: a rapid-access framework for interactive exploration of multi-sample spatial omics data www.biorxiv.org/content/10.64898/20…

011

chrismlangseth.bsky.social @chrismlangseth.bsky.social · 13/03/2026

This has been a long time coming for me. Ever since I started working on spatial data in 2019, when I began my PhD, I envisioned a tool that would allow for fast and efficient sharing of spatial omics data, while also enabling proper multi-sample overview.

100

chrismlangseth.bsky.social @chrismlangseth.bsky.social · 13/03/2026

To showcase the usefulness of KaroSpace, we created viewers across 18 datasets and 8 platforms, including Xenium, MERFISH, DBiT, Visium, OpenST, and CODEX and they can all be seen on karospace.se.

karospace.se

KaroSpace: a rapid-access framework for interactive exploration of multi-sample spatial omics data

110

chrismlangseth.bsky.social @chrismlangseth.bsky.social · 13/03/2026

In KaroSpace, users can inspect cell-level annotations, gene expression, neighborhood statistics, marker gene information, make tissue annotation, and much more. My favorite feature is the slider, where you can color your cells by opposing variables or annotations and slide across the tissue.

110

chrismlangseth.bsky.social @chrismlangseth.bsky.social · 13/03/2026

With KaroSpace, the viewer is a single standalone .html file that can be quickly opened in any browser or embedded in a webpage and shared with collaborators or the wider research community.

100

chrismlangseth.bsky.social @chrismlangseth.bsky.social · 13/03/2026

Let me introduce you to KaroSpace, which is a rapid-access framework for interactive exploration of multi-sample spatial omics data. The preprint can be accessed here: www.biorxiv.org/content/10.6...

biorxiv.org

163