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Charley McCarthy

@cgpmcc.bsky.social
8 followers 8 following 0 posts

Postdoc, DEEM Team, Université Paris-Saclay. 🇮🇪. He/him.

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Reposted by Charley McCarthy
Andrew Roger @andrewjroger.bsky.social · 21/09/2026
The brilliant Prof. Edward Susko gave a great online lecture on modeling heterogeneity in sequence evolution in the phylogenetic context as part of the @phyloseminar.bsky.social series: www.youtube.com/watch?v=-1aJ...
youtube.com
Phyloseminar #157: Ed Susko (Dalhousie University)
YouTube video by phyloseminar.org
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Reposted by Charley McCarthy
bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 09/09/2026
PartitionFinder-mAIC: Phylogenetic Partitioning using Marginal Akaike Information Criterion www.biorxiv.org/content/10.64898/20…
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Reposted by Charley McCarthy
DEEMteam_Orsay @deemteam.bsky.social · 04/09/2026
Databases may contain lots of misannotated 16S rRNA sequences, which can hinder accurate taxonomic assignment in metabarcoding and metagenomic analyses. We have addressed this issue for Asgard archaea and generated a curated set of high-quality 16S rRNA sequences: academic.oup.com/ismecommun/a...
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Reposted by Charley McCarthy
Andrew Roger @andrewjroger.bsky.social · 28/05/2026
1/ Our new paper in Systematic Biology "Modeling Site-and-Branch-Heterogeneity with GFmix" led by @cgpmcc.bsky.social describes improved ways to model compositional heterogeneity across both sites and branches—an important source of error in deep phylogenomics. doi.org/10.1093/sysb...
doi.org
Modeling Site-and-Branch-Heterogeneity with GFmix
Abstract. Phylogenetic trees are often inferred from protein sequences sampled from diverse taxa across the tree of life. The compositions of these amino a
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