Reposted by Caterina Fuster BarcelóJoel Lüthi @joelluethi.bsky.social · 14/08/2026We're excited to announce the 2026 OME-Zarr hackathon 🎉 📅 Date: November 2nd - November 6th 2026 📍 Location: University of Zurich, Zurich, Switzerland 💻 Virtual participation: possible for Monday afternoon, 1:00 PM CET 6:00 PM CET biovisioncenter.notion.site/2026-ome-zar... (1/6 🧵) 11414
Reposted by Caterina Fuster BarcelóVirginie Uhlmann @virginieuhlmann.bsky.social · 01/06/2026📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...jobs.uzh.chUZH: Bioimage AnalystThe University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp... 13428
Reposted by Caterina Fuster BarcelóJoel Lüthi @joelluethi.bsky.social · 29/04/2026Amazing to be at #OME2026 & talk about the future of OME-Zarr. @virginieuhlmann.bsky.social @lorenzocerrone.bsky.social & I were very happy to present the BioVisionCenter, ngio and Fractal yesterday. If you want to learn more, check out today’s ngio workshop: github.com/BioVisionCen... 0288
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 30/04/2026Back from ICLR 2026 in Rio! 🇧🇷 Highlights: presenting my poster at the LMRL workshop, Copacabana sunsets☀️, and the best coincidence: finding out my best friend got in too without us even planning it! 👯♀️ So grateful to @virginieuhlmann.bsky.social for the support. Where to next? 🚀 052
Reposted by Caterina Fuster BarcelóErick Ratamero @erickratamero.com · 02/04/2026I think it's very nice to read "here's what your $5400 a paper goes towards", but it's still charging $5400 so that we (scientists) provide content that we (scientists) review without pay and we (scientists) often have to pay to read at the end 131
Reposted by Caterina Fuster BarcelóVirginie Uhlmann @virginieuhlmann.bsky.social · 15/03/2026Check out @cfusterbarcelo.bsky.social's latest cool work! Domain shift, we are watching you 👀👀👀 084
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 15/03/2026Are FMs actually FMing? ⛓️🔬 Thrilled to share that our paper on Foundational Models for mitochondria segmentation in EM is heading to the @iclr-conf.bsky.social 2026 LMRL Workshop! 🚀 Check out the full work here: 📄 ArXiv: arxiv.org/abs/2602.08505 📄 OpenReview: openreview.net/forum?id=Bba...arxiv.orgAre Vision Foundation Models Foundational for Electron Microscopy Image Segmentation?Although vision foundation models (VFMs) are increasingly reused for biomedical image analysis, it remains unclear whether the latent representations they provide are general enough to support effecti... 195
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 17/11/2025Very happy to share some more pics! What an amazing week! I am still recovering! Thank you so much to you all❤️🩹🥲 031
Reposted by Caterina Fuster BarcelóJoel Lüthi @joelluethi.bsky.social · 17/11/2025More amazing organisers & helpers! @tischi.bsky.social @vladimirulman.bsky.social @normanrz.com @perlman.bsky.social @virginieuhlmann.bsky.social @lorenzocerrone.bsky.social @cfusterbarcelo.bsky.social & Valentina Marcelli (13/14 🧵) 141
Reposted by Caterina Fuster BarcelóJoel Lüthi @joelluethi.bsky.social · 17/11/2025A major refresh of the OME-NGFF website (ngff.openmicroscopy.org), making it clearer, more accessible, and easier to navigate (5/14 🧵) 161
Reposted by Caterina Fuster BarcelóJoel Lüthi @joelluethi.bsky.social · 17/11/2025We had an amazing OME-NGFF hackathon last week, Wednesday to Friday, following the inspiring OME-NGFF symposium. What a fantastic week! It’s hard to describe how motivating it is to be surrounded by so many talented, curious & friendly people who care deeply about open, FAIR bioimaging data. 1/14 🧵 24116
Reposted by Caterina Fuster BarcelóVirginie Uhlmann @virginieuhlmann.bsky.social · 13/11/2025We wrapped up the symposium part of our 2025 International OME-NGFF workshop on Tuesday. What a phenomenal two days! I'm humbled by the incredible positive energy, talent, and enthusiasm that filled this event. 12510
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 09/10/2025Had an amazing week in Saarbrücken at 🧫 Cell Physics 2025, @uni-saarland.de. Visiting some old friends, making some new ones and enjoying life sciences in such a great 🍂autumn🍁 environment! 000
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 09/10/2025You may think it has finished but 🦒 AI4Life -@ai4life.bsky.social - is very much alive✨! Check out my presentation at Cell Physics conference today at Saarbrücken! You can check it in Zenodo! zenodo.org/records/1730... 100
Reposted by Caterina Fuster BarcelóAnna Foix @afoix.bsky.social · 23/09/2025Happy to share that ShapeEmbed has been accepted at @neuripsconf.bsky.social 🎉 SE is self-supervised framework to encode 2D contours from microscopy & natural images into a latent representation invariant to translation, scaling, rotation, reflection & point indexing 📄 arxiv.org/pdf/2507.01009 (1/N) 37126
Reposted by Caterina Fuster BarcelóJoel Lüthi @joelluethi.bsky.social · 25/08/2025We're happy to announce the 2025 International OME-NGFF workshop 🎉 📅 Dates: - Symposium: Nov 10–11, 2025 - Hackathon: Nov 12–14, 2025 📍 Location: Zurich, Switzerland Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up... #bioimaging #openscience #OMENGFF #OMEZarr (1/x 🧵) 14032
Reposted by Caterina Fuster BarcelóArrate Munoz-Barrutia @arratemunoz.bsky.social · 29/05/2025Prou (ex-)supervisor & (always) mentor of @ai4life.bsky.social @egomezm.bsky.social Teresa Zulueta Coarasa; @danifranco93.bsky.social @cfusterbarcelo.bsky.social Carlos Garcia Lopez de Haro @uc3m @cienciauc3m 032
Reposted by Caterina Fuster BarcelóAI4Life @ai4life.bsky.social · 27/05/2025First workshop is rolling! 🚀 We’re diving into the BioImage Model Zoo @bioimageIO — where life scientists meet powerful AI tools for bioimage analysis. Let’s explore what’s inside the Zoo! 🐾 0134
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 26/05/2025No he podido evitar pensar en la charla que di en el @t3chfest.es al ver este vídeo de @tamayostuff.bsky.social desmontando el lobby de las revistas científicas. No todo lo que brilla es oro y no todos los artículos científicos son verdad. www.youtube.com/watch?v=xq3X...youtube.comColamos un ESTUDIO FALSO en una revista científica | Así funcionan los PREDATORY JOURNALSYouTube video by TAMAYO 021
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/05/2025Thank you #neubiaspasteur2025 for the great energy! My slides on AI-based bioimage analysis pipelines (and SAMJ!) are now up on Zenodo. I hope you took away something new! 💡 🔗 zenodo.org/records/1539... 0158
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/05/2025Thank you very much to @florianjug.bsky.social and The Column for such an amazing talk! It’s always great to hear from you! #neubiaspasteur2025 162
Reposted by Caterina Fuster BarcelóJoanna Pylvänäinen @jwpylvanainen.bsky.social · 13/05/2025Great recipe from @cfusterbarcelo.bsky.social on how to train a DL model 0115
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 24/04/2025🚀 Materials from my session on Advanced CNNS — (slides + notebook) now available on Zenodo! An introduction and very practical pov on CNNs and hands-on tasks on classification, detection & segmentation. 🔗https://t.co/g8KCMprM1C 100
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 15/03/2025Wrapping up an incredible two days at EPFL! From inspiring talks & workshops to lab visits & great conversations, it’s been amazing connecting with new and old friends. Sad to leave so soon—thanks for having me! Until next time! 🚀🔬💙 000
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 14/03/2025📝 Slides & workshop materials are now available! 🎉 If you missed my talk at EPFL Open Microscopy 2025, you can find everything on Zenodo: 🔗 zenodo.org/records/1502... Also includes deepImageJ & SAMJ guides for the afternoon workshop! 🧬🔬 000
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 14/03/2025🚀 Excited to be at EPFL Open Microscopy & AI Workshop 2025 today, sharing insights on deep learning for bioimage analysis! 🎤🔬 Let's talk AI & microscopy! 🤖🧬 www.epfl-open-microscopy.comepfl-open-microscopy.comEPFL Workshop on Open Microscopy & AI 010
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/03/2025Además, tenéis mis diapositivas del #t3chfest10 disponibles en Zenodo.org por si os habéis perdido algún detalle! 📡 👉 zenodo.org/records/1501... 010
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/03/2025Muchísimas gracias a toda la gente que ha asistido a mi charla en el #t3chfest10 👏 He disfrutado un montón gracias a este maravilloso público! Muchas gracias también a la organización @t3chfest.es 🚀📡 132
Reposted by Caterina Fuster Barcelóoxkhar.bsky.social @oxkhar.bsky.social · 13/03/2025Muy buena la charla de @cfusterbarcelo.bsky.social aplicando ciencia para combatir la desinformación, tanto por contenido como de forma. Enhorabuena… #t3chfest10 121
Reposted by Caterina Fuster BarcelóJuan Luis @juanlu.space · 13/03/2025Me vengo al track 2 a escuchar a @cfusterbarcelo.bsky.social que nos va a hablar de paranoicos de las antenas, esto promete #t3chfest10 111
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/03/2025Si te has quedado sin entrada, podrás disfrutar de mi charla a través del LIVE de YouTube! No te pierdas como fue discutirse contra negacionistas del 5G! #t3chest10 👉🏻 www.youtube.com/live/gM5SvaV...youtube.com🔴 Track 2 | Ahora «Desinformación y Antenas de Telecomunicación: Cómo Combatir el Mi...» T3chFest 10YouTube video by T3chFest 010
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/03/2025Buenos días! No os olvidéis de pasaros a las 10:00 por el Track 2 para conocer más sobre antenas de telecomunicación, el miedo y la desinformación! #t3chfest @t3chfest.es 🗼📡📶 010
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 18/02/2025🚀 The slides from my talk at U. Comillas on ECGs, PPGs, and their healthcare applications ❤️🩹 are now available open access on Zenodo! 📂🔓 👉https://zenodo.org/records/14865968 000
Caterina Fuster Barceló @cfusterbarcelo.bsky.social · 13/12/2024Resulta que @uib.cat és una de les universitats espanyoles que segons l’etapa acadèmica té menys dones a la seva plantilla cada vegada que pujam en l’escala de posicions i contractes. #PIAS2024 000