Bohan Zhao @bohanzhao.bsky.social · 13/06/2026Thanks. 1. DV (Z-axis) Reference Points: In my viewer, the DV axis is calibrated using Bregma as 0. The right viewer should use the dura DV 0. 2. AP Alignment: Looking at the two panels, the AP coordinates don't perfectly match (1.15 mm vs. 1.18 mm). 000
Bohan Zhao @bohanzhao.bsky.social · 27/05/2026So I built a small tool that merges Allen CCFv3 with the traditional bregma-relative coordinate system (calibrated with Paxinos & Franklin's Atlas). Click any coronal or sagittal section, and get coordinates instantly. bohanzhao.com/Atlas Hope it saves someone a headache 🐭bohanzhao.comMouse Brain Stereotaxic Coordinate ViewerFree interactive tool: enter bregma-relative AP/ML/DV coordinates to navigate Allen Mouse Brain Atlas coronal and sagittal sections. Brain regions identified in real time. 1339