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Stephen A. Smith

@blackrim.bsky.social
355 followers 55 following 25 posts
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Reposted by Stephen A. Smith
Andrew Hipp @andrewlhipp.bsky.social · 10/01/2026
Our new commentary on @blackrim.bsky.social et al's fascinating work in @newphyt.bsky.social, using simulation and analysis of empirical data to scale microevolutionary process to macroevolutionary patterns. Punchline: death rate and max age are driving. nph.onlinelibrary.wiley.com/doi/10.1111/...
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Tom Carruthers @tomacarruthers.bsky.social · 29/11/2025
Sad to be finishing up as a postdoc in @blackrim.bsky.social 's lab. I've had such a great time there! Also excited to be about to start as an Assistant Professor/Lecturer at University College Dublin.
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Shelly Gaynor @shellygaynor.bsky.social · 24/11/2025
When I built nQuack, I wanted to be able to capture both allopolyploids and autoployploids - which differ in expected proportions of heterozygotes. Specifically, we expected autopolyploids to look like cats or dogs (2/n)
Which pet fits the tetrasomic allele frequencies best - Gus (a cat) vs Bruno (a German Shepherd)
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Shelly Gaynor @shellygaynor.bsky.social · 24/11/2025
New paper just posted with @rschley.bsky.social et al: doi.org/10.1111/nph.... (1/n)
doi.org
The frequency and importance of polyploidy in tropical rainforest tree radiations
The presence of two or more copies of the genome in an organism, termed ‘polyploidy’, is a crucial force in plant evolution, generating genetic, phenotypic and ecological diversity. The Amazonian tr...
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Stephen A. Smith @blackrim.bsky.social · 15/10/2025
fun paper with a lot of great folks @tomacarruthers.bsky.social @willweaver.bsky.social @phylieu.bsky.social @jamesbpease.bsky.social @gbradburd.bsky.social and more nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com
Longevity in plants impacts phylogenetic and population dynamics
Phylogenies of long-lived plants often exhibit short molecular branch lengths and high levels of gene-tree conflict. However, the biological mechanisms underlying these patterns remain unclear. We e.....
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James Pease @jamesbpease.bsky.social · 07/08/2025
Congrats to (newly graduated) Dr. Ellen Weinheimer for her new publication in @theplantjournal.bsky.social on drought responses in the iconic umbrella acacia of the African savannas using a "differential gene reaction" analysis developed for this project onlinelibrary.wiley.com/doi/10.1111/....
onlinelibrary.wiley.com
Differential gene reactions reveal drought response strategies in African acacias
We studied the genetic basis of drought response in two well-known and widespread species of African acacia by analyzing gene expression reactions across a water deprivation experiment using a newly ...
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phy_papers @phypapers.bsky.social · 25/06/2025
Longevity in plants impacts phylogenetic and population dynamics www.biorxiv.org/content/10.1101/202…
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Joseph W. Brown @josephwb.bsky.social · 28/05/2025
In the grand tradition of Gould, I love when papers use analogies (and art!) to frame their questions. This first line (on the age of angiosperms) from @blackrim.bsky.social and @phylieu.bsky.social is a banger. nph.onlinelibrary.wiley.com/doi/10.1111/... 🧪
Highlighted text:

During the Reformations of the 16th and 17th centuries, populist
movements like the Reformation Iconoclasts attempted to strip
away the superfluous elements of Christian worship to move closer
to the truth (Fig. 1). We draw on this analogy to discuss
divergence-times of angiosperms for two purposes.Figure 1: Fig. 1 The destruction of Our Lady in Antwerp, part of the Beeldenstorm of 20 August 1566. Engraved by Frans Hogenberg (in the public domain).
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Signal in the Storm @signalinthestorm.bsky.social · 11/04/2025
news.bloomberglaw.com/litigation/f...
news.bloomberglaw.com
Foreign Michigan Students Sue Over Revoked Immigration Status
Four Michigan college students sued the Trump administration on Thursday over the abrupt termination of the federal government’s permission for them to study in the United States.
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Signal in the Storm @signalinthestorm.bsky.social · 11/04/2025
www.science.org/content/arti...
science.org
Trump seeks to end climate research at premier U.S. climate agency
White House aims to end NOAA’s research office; NASA also targeted
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Signal in the Storm @signalinthestorm.bsky.social · 01/04/2025
NIH, CDC, and FDA getting RIFs this morning www.reddit.com/r/fednews/co...
reddit.com
From the fednews community on Reddit
Explore this post and more from the fednews community
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Cory Booker @corybooker.com · 02/04/2025
I may be tired and a little hoarse, but as I said again and again on the Senate floor, this is a moment where we cannot afford to be silent, when we must speak up.
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Stephen A. Smith @blackrim.bsky.social · 27/03/2025
I am honored to be elected an AAAS fellow! news.umich.edu/13-u-m-facul...
news.umich.edu
13 U-M faculty named as 2024 AAAS fellows
Thirteen University of Michigan faculty members earned election to the American Association for the Advancement of Science in 2024.
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Signal in the Storm @signalinthestorm.bsky.social · 26/03/2025
www.nature.com/articles/d41...
nature.com
Exclusive: NIH to cut grants for COVID research, documents reveal
Studies on climate change and South Africa are also on the latest list of grants to be terminated, according to updated documents obtained by Nature.
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Signal in the Storm @signalinthestorm.bsky.social · 24/03/2025
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Tom the Dancing Bug, by Ruben Bolling @rubenbolling.bsky.social · 21/03/2025
Okay, here is this week’s comic. NEWS OF THE TIMES: LOCAL CRACKPOT TAKES TRUMP SERIOUSLY - Brought to you by the Inner Hive, including longtime member Burkbark and new member Darren Bedwell ( bit.ly/theInnerHive ) - READ IT RIGHT HERE👇
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Signal in the Storm @signalinthestorm.bsky.social · 23/03/2025
NYU hacked and data leaked - politically motivated nyunews.com/news/2025/03... also here signalinthestorm.org/news.html
nyunews.com
Over 3 million applicants’ data leaked on NYU’s website - Washington Square News
A hacker took over NYU’s website for at least two hours Saturday morning to expose over 3 million applicants’ names, test scores, majors and zip codes, as well as information related to family members...
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Jeremy Berg @jeremymberg.bsky.social · 21/03/2025
Well, this took my breath away a bit... www.nytimes.com/2025/03/21/n...
nytimes.com
Decades Ago, Columbia Refused to Pay Trump $400 Million. Note That Number.
A quarter century ago, the university was looking to expand. It considered, and rejected, property owned by Donald Trump. He did not forget it.
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Signal in the Storm @signalinthestorm.bsky.social · 21/03/2025
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Signal in the Storm @signalinthestorm.bsky.social · 21/03/2025
🚨 Now on Bluesky! 🚨 We’re Signal in the Storm, a project dedicated to tracking federal policy changes and news re: academia - follow us here and at signalinthestorm.org/index.html
signalinthestorm.org
Signal in the Storm
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Signal in the Storm @signalinthestorm.bsky.social · 20/03/2025
Executive order on Dept of Ed www.whitehouse.gov/articles/202... summarized here at the top signalinthestorm.org/eos.html TLDR: shifting from fed to states
whitehouse.gov
On Education, President Trump Knows We Can Do Better
Since 1979, the U.S. Department of Education has spent over $3 trillion with virtually nothing to show for it. Despite per-pupil spending having increased
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Signal in the Storm @signalinthestorm.bsky.social · 20/03/2025
The Trump administration is exerting unprecedented pressure on American universities, demanding compliance with specific policies or facing substantial federal funding cuts. www.nytimes.com/2025/03/20/u... signalinthestorm.org/news.html
nytimes.com
Trump’s Battles With Colleges Could Change American Culture for a Generation
Many in higher education worry Trump’s efforts to bend academia to his will could end American leadership in research and science. Universities are not finding many allies to defend them.
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Signal in the Storm @signalinthestorm.bsky.social · 20/03/2025
Federal immigration detained an Indian national and postdoc at Georgetown University. www.nytimes.com/2025/03/19/u... signalinthestorm.org/news.html
nytimes.com
D.H.S. Detains a Georgetown University Academic
Badar Khan Suri, an Indian citizen teaching on a student visa, was deemed “deportable,” a spokeswoman for the Department of Homeland Security said.
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Signal in the Storm @signalinthestorm.bsky.social · 20/03/2025
President Trump is set to sign an executive order directing the dismantling of the U.S. Department of Education. www.nytimes.com/2025/03/19/u... signalinthestorm.org/news.html
nytimes.com
Trump to Sign Order Aimed at Dismantling Education Department
The order, which President Trump may sign on Thursday, will lay the groundwork for eventually shuttering the agency, reassigning some of its primary duties.
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Gina Baucom @gbaucom.bsky.social · 19/03/2025
Check here for daily updates!
Signal in the storm logo. As per AI "A lighthouse beacon, a symbol of hope and guidance, shines brightly through a stormy sea, cutting through the darkness to guide seafarers through treacherous waters"
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Stephen A. Smith @blackrim.bsky.social · 19/03/2025
a link to rescinded HHS grants (data from HHS) taggs.hhs.gov/Content/Data... and a link to community-contributed rescinded NSF and NIH grants docs.google.com/spreadsheets... seen on signalinthestorm.org
taggs.hhs.gov
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Gina Baucom @gbaucom.bsky.social · 17/03/2025
Here's a super helpful site called Signal in the Storm that is automated to keep track of federal policy changes (EO's and Ed dept) and news re: academia. Also includes suggestions on what to do, and a faq's page about indirects, etc. Pls RT! signalinthestorm.org/index.html
signalinthestorm.org
Signal in the Storm
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Maribeth Latvis @maribethlatvis.bsky.social · 15/03/2025
Prairie Practice and Pedagogy gallery opening: UArk Fine Arts in collaboration with @uarkherbarium.bsky.social 🤝. Kids these days with their punk rock plant zines 🥲
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Humberto Basilio @humbertobasilio.bsky.social · 14/03/2025
🚨This week, many Columbia scientists lost grants that funded over half their annual income. Others will no longer be able to do research that helps treat thousands of sick patients across the US. "It hurts," they told me. My story for @nature.com 🧪 www.nature.com/articles/d41...
nature.com
‘My career is over’: Columbia University scientists hit hard by Trump team’s cuts
The US government has begun slashing US$400 million in research grants at Columbia University over pro-Palestinian campus protests.
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Brendan Nyhan @brendannyhan.bsky.social · 14/03/2025
If the government can do this to universities, we don't live in a free society. Five alarm fire.
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Stephen A. Smith @blackrim.bsky.social · 14/03/2025
www.nytimes.com/2025/03/13/u...
nytimes.com
Federal Cuts Prompt Johns Hopkins to Cut More Than 2,000 Workers (Gift Article)
The university, a leader in scientific research, has been hard hit by the Trump administration’s cuts, which will slash at least $800 million from its budget.
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The Wall Street Journal @wsj.com · 11/03/2025
The Trump administration has terminated $800 million in grants to Johns Hopkins University, spurring the nation’s top spender on research and development to plan layoffs and cancel health projects
wsj.com
Johns Hopkins Plans Staff Layoffs After $800 Million Grant Cuts
Local and international health research efforts are already winding down as the university braces for even more potential cuts.
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Jeremy Berg @jeremymberg.bsky.social · 11/03/2025
I have confirmation from several sources now that all T32s, many F30s and F31s, and most or all Center awards (P30, P50) have been terminated at Columbia. This is quite damaging to research and to individuals. This is pure terrorism and cannot be legal. But litigation will take time...
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Stephen A. Smith @blackrim.bsky.social · 11/03/2025
I am sure this has been posted already but just in case some folks haven't seen it www.ed.gov/about/news/p...
ed.gov
U.S. Department of Education’s Office for Civil Rights Sends Letters to 60 Universities Under Investigation for Antisemitic Discrimination and Harassment
The Office for Civil Rights today sent letters to 60 institutions of higher education warning them of potential enforcement actions if they do not fulfill their obligations under Title VI of the Civil...
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Carl Zimmer @carlzimmer.com · 11/03/2025
Kennedy Links Measles Outbreak to Poor Diet and Health, Citing Fringe Theories. Story by @teddyrosenbluth.bsky.social Gift link: nyti.ms/3FvFUej
nyti.ms
Kennedy Links Measles Outbreak to Poor Diet and Health, Citing Fringe Theories (Gift Article)
In a recent interview, the health secretary also suggested that the measles vaccine had harmed children in West Texas, center of an outbreak.
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Jacquelyn Gill @jacquelyngill.bsky.social · 10/03/2025
Kevin is a good friend and colleague. Please share widely and feel free to pass along any opportunities that might be a good fit!
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Stephen A. Smith @blackrim.bsky.social · 08/03/2025
Canadian Whiskey Before Breakfast youtu.be/4tkpGXqlolc
youtu.be
Canadian Whiskey Before Breakfast
YouTube video by Stephen Smith
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Carl T. Bergstrom @carlbergstrom.com · 07/03/2025
I’ve repeatedly been scolded for sharing direct reports, from scientists that I know personally, about disastrous orders coming from the current administration. I’m told this hasn’t been vetted by a news organization and so I shouldn’t post it here. No. I believe my colleagues.
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Sam Barnett @sambarnett15.bsky.social · 07/03/2025
Great showing supporting science! Excellent speakers! Stand up for Science in Lansing Michigan.
Science is for everyone and science saves lives.
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Stephen A. Smith @blackrim.bsky.social · 07/03/2025
www.nytimes.com/2025/03/07/o... Worth a read in order to better know who wants to attack higher ed. 1/4
nytimes.com
Opinion | The Anti-D.E.I. Crusader Who Wants to Dismantle the Department of Education (Gift Article)
Christopher Rufo’s mission to make universities feel “existential terror.”
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Matt Rockman @wormsrock.bsky.social · 07/03/2025
Lots of people at the rally in New York! Josh Dubnau from Stony Brook gave the speech the moment demands: attacks on science funding are bad, but they’re downstream of fascism, and we need to fight the fascism even when we’re not the targets
100s of people at the Stand up for Science rally in Washington Square Park. They’re holding signs in front of the Wash Square arch
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Stacy Farina @stacyfarina.bsky.social · 07/03/2025
Huge crowd at Stand up for Science
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Carl Zimmer @carlzimmer.com · 07/03/2025
DOJ, HHS, ED, and GSA Announce Initial Cancellation of Grants and Contracts to Columbia University Worth $400 Million (government press release) www.gsa.gov/about-us/new...
gsa.gov
DOJ, HHS, ED, and GSA Announce Initial Cancellation of Grants and Contracts to Columbia University Worth $400 Million
Today, the Department of Health and Human Services (HHS), Department of Education (ED), and the U.S. General Services Administration (GSA) announced that through their coordinated efforts they would i...
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Michael Hendricks 🇨🇦 @michaelhendricks.bsky.social · 07/03/2025
Blatantly illegal. It's time to start fighting, universities. The pretexts will change, but they are coming for all of you.
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Luis Zaman @luiszaman.bsky.social · 07/03/2025
This CDC "survey" getting sent to grantees is wild yall. This is some serious "Kiss my Ring" level bullshit.
Survey for CDC grants that include "no DEI" "no environmental justice" or climate related work, the biologically bullshit argument that "protecting women against gender ideology"more MAGA propaganda (with receipts since it links an executive order under most questions). "Do you counter malign influence, including Chinga?", "What impact does this project have on preventing illegal immigration"? What impact does this project have on protecting religious minorities, promoting religious freedom, and combatting Christian persecution? Establishment of the White House Faith Office and Eradicating Anti-Christian Bias
What impact does this project have in increasing American influence, trust and reputation within foreign governments?
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Gina Baucom @gbaucom.bsky.social · 06/03/2025
www.nytimes.com/interactive/...
nytimes.com
Opinion | Trump Purged These Watchdogs From Government (Gift Article)
President Trump promised to investigate waste and fraud in the government, but he’s fired the watchdogs who did exactly that.
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Stephen A. Smith @blackrim.bsky.social · 02/03/2025
In recognizing that lots of students (undergrads and grads) are unaware of the dire situation created by the recent executive / DOGE actions, I am trying to compile a list of how these will impact folks so I can make materials and spread the word and get more advocates. 1/2
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Alexander Lees @alexanderlees.bsky.social · 02/03/2025
So that's the beginning of the end for US Old Growth Forests then, prepare for massive biodiversity and carbon loss, here billed as the opposite www.whitehouse.gov/presidential... 🌎
whitehouse.gov
Immediate Expansion of American Timber Production
By the authority vested in me as President by the Constitution and the laws of the United States of America, it is hereby ordered: Section 1.  Purpose.
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