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Marc Baaden

@baam93.bsky.social
76 followers 100 following 62 posts

Theoretical chemist | Transforming microscopic worlds into creative adventures | 🧪 Bridging science, art, and imagination | Exploring the fascinating narratives hidden in molecules

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Marc Baaden @baam93.bsky.social · 08/06/2026
Same atoms, different shape, opposite result. Only the roomier δ-form of hexachlorocyclohexane carries chloride across a membrane; its crowded β-twin can't. Shape, not how tightly it grips the ion, controls transport. New in JACS Au: link.growkudos.com/1f1vq4w44jk #AnionTransport
link.growkudos.com
How a molecule's shape decides whether it can ferry chloride across a membrane
Cells depend on moving ions like chloride across their membranes, and small molecules that can ferry ions across are sought after as possible treatments for diseases such as cystic fibrosis. We compar...
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Reposted by Marc Baaden
Julie Ledoux @jldx.bsky.social · 24/04/2026
So it is out! 🎉 I am so excited to share our preprint with Fabio Sterpne and @baam93.bsky.social on the development of a force field for oligourea foldamers, new self-assembling polymers of unnatural amino acids, designed for water desalination membranes. www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by Marc Baaden
Dr. Hab Sophie Sacquin-Mora @sacquin-mo.eurosky.social · 22/11/2025
C'est la saison des thèses et vous ne savez pas quoi offrir aux futur·e·s docteur·e·s de votre laboratoire ? Sachez que vous pouvez recycler leurs posters (textiles) en tote bag et en plus je vous ai fait un tuto !
Photo de tout nouveau docteur tenant son postote-bag sur l'épaule.tutoriel en français pour coudre un tote bag dans un poster textile
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Marc Baaden @baam93.bsky.social · 20/11/2025
An LLM‑run robot vacuum hit an existential crisis while ‘passing the butter’ – only 40% success vs 95% humans. 🤖 What does this say about embodied AI? #ai #robotics Read more → futurism.com/artificial-intelligenc…
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Marc Baaden @baam93.bsky.social · 20/11/2025
Turns out woodpeckers are tiny hammer‑machines: neck, hips, tail & a rapid ‘grunt‑breath’ sync to slam 30× their weight into wood. Whole‑body power meets quirky respiration. 🐦💥#biology #ornithology #science newatlas.com/biology/wood...
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Marc Baaden @baam93.bsky.social · 19/11/2025
AI isn’t replacing us—it’s giving us a new team of smart agents to manage. The next‑gen talent will delegate, QA, and orchestrate multiple bots like a boss. Ready to upskill? 🤖 #aimanager #futureofwork #skills Read more → builtin.com/articles/ai-managers-jo…
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Marc Baaden @baam93.bsky.social · 17/11/2025
Juno’s latest snaps of Jupiter are jaw‑dropping 🌌—and you can help turn raw data into art! Dive into the new images, add your own color tweaks, and share with the JunoCam community. What will you create? 🚀 #space #jupiter #citizenscience www.popsci.com/science/jupiter-stun…
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Marc Baaden @baam93.bsky.social · 16/11/2025
Winter blues? Try 4 research‑backed hacks: schedule anchor routines, soak up daily daylight, actively cultivate joy, and add 10 min of mindful pauses. 🌤️✨ #winterwellbeing #mentalhealth theconversation.com/4-research-back…
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Marc Baaden @baam93.bsky.social · 15/11/2025
Ever met someone who can spot a face in a crowd instantly? Meet the “super‑recognizers”—the brain’s hidden eagle eyes that catch details the rest of us miss. 🧠🔍 #neuroscience #psychology Read more → nautil.us/how-super-recognizers-see…
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Marc Baaden @baam93.bsky.social · 12/11/2025
Quantum bits can be 0 and 1 until we look—super‑position & entanglement sound like sci‑fi, but hardware is fragile. The real win will be hybrid, auditable workflows turning quantum noise into insight. Ready? 🤔🚀 #quantum #computing mindlab.marc-baaden.de/qubits-meet-…
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Marc Baaden @baam93.bsky.social · 30/10/2025
Want to know exactly how many proteins fit in an E. coli cell or how fast a ribosome works? BioNumbers serves up thousands of curated biological constants—perfect for models, experiments, or trivia night. 🚀🔬 Read more → idees.moleculair.es/bionumbers #bionumbers #biology #datascience
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Marc Baaden @baam93.bsky.social · 29/10/2025
🚀 Cryo‑EM now reaches near‑atomic resolution, letting us watch molecules in real time—game‑changing for drug design and biology. What breakthrough excites you most? 👀 #cryoem #innovation #research Read more → idees.moleculair.es/cryowonder
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Marc Baaden @baam93.bsky.social · 28/10/2025
AI is turning molecular viz into a real‑time, chat‑driven 3D playground—anyone can spin proteins, predict interactions and simulate behavior on a laptop. 🚀 Democratizing drug discovery worldwide. What’s your experience? #ai #molecularscience #visualization idees.moleculair.es/ai-molviz
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Marc Baaden @baam93.bsky.social · 27/10/2025
Struggling to reproduce molecular dynamics results? 🤔 Clear documentation, version control, and containerization are key. Let's work together to strengthen our field! What have you found helpful for reproducibility? #reproducibilitymatters #moleculardynamics → idees.moleculair.es/reproduciblemd
idees.moleculair.es
Reproducible Molecular Dynamics: A Practical Playbook | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 26/10/2025
A decade of building scientific software taught me this: innovation lives where chemistry meets code—docs, UX, collaboration, and reproducibility are the real force multipliers. 💡🧪 #scientificsoftware #computationalchemistry What do you think? idees.moleculair.es/chemistrycodes
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Marc Baaden @baam93.bsky.social · 25/10/2025
Publish or perish.. that was yesterday. How does the academic trade look nowadays? A small week-end animation to get a discussion going :) #academia #publish #perish
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Marc Baaden @baam93.bsky.social · 25/10/2025
Diverse teams drive smarter computational chemistry—new ideas, better checks, faster progress ⚗🌍 Let’s champion inclusion and share initiatives that work. What’s moved the needle for you? Read more → link : idees.moleculair.es/diversity #compchem #diversity #stem
idees.moleculair.es
Beyond Algorithms: Diversity in Computational Chemistry | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 24/10/2025
Machine learning can spot and classify subtle membrane protein moves at scale—faster, sharper, and improving with each run 🤖🧪 What do you think? Read more → link #moleculardynamics #machinelearning #bioinformatics idees.moleculair.es/md-ml
idees.moleculair.es
Machine Learning for Molecular Dynamics: Accelerating Membrane Protein Conformational Analysis | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 23/10/2025
AI boosts prediction, but force fields keep us honest—combine both for power + clarity ⚗🤖 What do you think? Read more → link below #moleculardynamics #computationalchemistry #ai idees.moleculair.es/aiforcefields
idees.moleculair.es
Force Fields + AI: A Pragmatic Path for Molecular Simulation | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 22/10/2025
Beautiful ≠ truthful: prioritize scale, color, and clarity over rainbow‑pretty proteins—function first, form second. 🎯🔬 #scientificvisualization #molecularscience What’s your top visualization pet peeve? Read more → idees.moleculair.es/molvis-preci...
idees.moleculair.es
Precision Over Polish in Molecular Visualization | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 21/10/2025
Human-in-the-loop turns raw models into smarter, creative science—experienced chemists guide edge cases, interactivity and visualization steer breakthroughs 🧠⚗ Read more → link. #molecularmodeling #humanaicollaboration Idées Moléculaires ↗ idees.moleculair.es/humanloop
idees.moleculair.es
Human-in-the-Loop: Where Molecular Modeling Finds Its Edge | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 20/10/2025
French modeling is leaning hard into multi‑scale: electrons in membranes, nucleosomal DNA damage, and α7 nAChR allostery—clear momentum 📈🔬 What do you think? Read more → Multi‑Scale Molecular Simulations at GGMM 2025: idees.moleculair.es/ggmm25-multi... ↗ #multiscale #computationalchemistry #france
idees.moleculair.es
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Marc Baaden @baam93.bsky.social · 19/10/2025
Proteins aren’t static snapshots—they’re dynamic ensembles driving function ⚡ Let’s think beyond single structures and embrace motion to truly understand biology. What do you think? 🔬 #proteindynamics #molecularmotion idees.moleculair.es/proteins-in-...
idees.moleculair.es
Proteins in Motion: Static Structures Are Just One Frame | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 18/10/2025
Day 1 at GGMM 2025: a retrospective on a milestone for the French molecular modeling community—spotlighting structural bioinformatics, AI, integrative modeling, and dazzling visualization, plus my MolPlay poster demo 🎯🧬 Read more → idees.moleculair.es/ggmm2025-day1 - Forges-Les-Eaux 🧬✨ ↗ #ggmm2025
idees.moleculair.es
Day 1 at GGMM 2025 - Forges-Les-Eaux 🧬✨ | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 17/10/2025
Free month of Comet Pro for research/coding/agentic browsing—try it here: pplx.ai/drbaaden7033 ↗ (opt‑in only; I get a small referral bonus; try if useful). ⚗️✨🧪 #ai #research #coding
pplx.ai
Try Comet with Pro included
For a limited time, get access to Comet with a month of free Perplexity Pro
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Marc Baaden @baam93.bsky.social · 17/10/2025
Curiosity vs credibility in peer review: should journals entertain whimsical ideas or enforce firmer guardrails? 🧪🛰️ What’s the strangest paper you’ve seen—and did it change your view? Read more → idees.moleculair.es/saturn-neuro... ↗ #peerreview #openscience #academia
idees.moleculair.es
Curiosity vs Credibility: Rethinking Peer Review’s Boundaries | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 16/10/2025
Human intuition still matters in computational chemistry: when the numbers look perfect but feel wrong, step back, sketch, let experience guide the model — breakthroughs may happen 🔬✨ What do you think? Read more → idees.moleculair.es/humanedge #computationalchemistry #research #innovation
idees.moleculair.es
The Human Edge in Computational Chemistry | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 15/10/2025
AI retrosynthesis shines on easy routes but stalls when synthetic accessibility drops—hard molecules still beat smart models. ⚗️🤖 What’s your experience? Read more → Idées Moléculaires ↗ #chemistry #ai #retrosynthesis idees.moleculair.es/retrosynthesis
idees.moleculair.es
AI Retrosynthesis Falters on Low Synthetic Accessibility | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 12/10/2025
Curiosity takes the stage at the Grand Palais: live demos linking chemistry, simulations, and hands-on learning—turn wonder into action 🔬✨ #fetedelascience #simulationmoléculaire Read more → www.palais-decouverte.fr/au-programme...
palais-decouverte.fr
Fête de la science au Grand Palais - Palais de la découverte
Venez expérimenter les sciences avec les médiateurs du Palais de la découverte, discuter avec des scientifiques et découvrir l'exposition Transparence au Palais
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Marc Baaden @baam93.bsky.social · 11/10/2025
Fête de la Science at LFIV Francfort: from deforming metals to virtual molecule journeys, students brought sharp questions and real wonder ✨🔬 Gratitude to CNRS and the Embassy teams. #science #education #vr
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Marc Baaden @baam93.bsky.social · 10/10/2025
MD myth-busting: results hinge on force fields, smart sampling, and realistic scope—not just longer runs. Let’s share what’s worked (and failed) in practice. 🔬💡 What do you think? Read more → idees.moleculair.es/md-myths ↗ #moleculardynamics #computationalchemistry #research
idees.moleculair.es
MD Myths: Accuracy, Sampling, and Practicality | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 09/10/2025
Innovation thrives with boundaries—rest fuels better science and sustainable impact. Set limits, find mentors, track mental health, celebrate small wins. What’s your go-to balance habit? 💡🧠 Read more → mindlab.marc-baaden.de/noburnout ↗ #research #wellbeing #academia
mindlab.marc-baaden.de
Innovation Without Burnout: Boundaries for Better Research | MindLab by Baaden Scientific
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Marc Baaden @baam93.bsky.social · 08/10/2025
A “failed” control didn’t break our study—it rewrote the hypothesis and led to sharper insights 🔬✨ #molecularscience #research Read more → Idées Moléculaires ↗. What do you think? idees.moleculair.es/how-a-contro...
idees.moleculair.es
How a Control Rewrote Our Hypothesis | Idées Moléculaires
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Marc Baaden @baam93.bsky.social · 07/10/2025
NanoPutiens turn molecular building blocks into tiny characters—smart, playful chemistry education at the nanoscale 🔬✨ #chemistry #education #nanotech Read more → folies.moleculair.es/actus/nanopu... ↗
folies.moleculair.es
Les NanoPutiens: Les Plus Petits Humains du Monde 🔬 - Folies Moléculaires
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Marc Baaden @baam93.bsky.social · 06/10/2025
Les Folies Moléculaires: turning chemistry into playful, accessible learning for the 21st century 🎉 and in French language. Curious how visualization can boost science education? Read more → is.gd/YmdRXe ↗ #chemistry #scicomm #education
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I’m happy to share the Les Folies Moléculaires project I worked on. Check it out here (in French only): https://lnkd.in/ePXk4-CX | Marc Baaden
I’m happy to share the Les Folies Moléculaires project I worked on. Check it out here (in French only): https://lnkd.in/ePXk4-CX
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Marc Baaden @baam93.bsky.social · 05/10/2025
Membrane charge subtly tunes NOX5 electron flow—systems self‑balance to keep ET slightly favorable 🔬⚡ #nox5 #membranes #electrontransfer Read more → link.growkudos.com/1e46g8nfbpc
link.growkudos.com
How cell membrane charges fine‑tune electron flow in NOX enzymes
This study explores how NADPH oxidase 5 (NOX5) moves electrons across cell membranes to make reactive oxygen species. Using long molecular dynamics simulations and a linear‑response analysis, the work...
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Marc Baaden @baam93.bsky.social · 05/10/2025
Forged authorship in academic publishing is escalating—Elsevier retracted a fraudulent paper submitted under a stolen identity, but kept it accessible, raising urgent questions about verification and integrity. 🔍 What do you think? Read more → is.gd/20uq7r
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This is quite shocking and a new turn in the fabricated paper business: forging an author's identity.. where is all this going? | Marc Baaden
This is quite shocking and a new turn in the fabricated paper business: forging an author's identity.. where is all this going?
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Marc Baaden @baam93.bsky.social · 04/10/2025
Failed experiments aren’t dead ends—they’re data and direction. Log the misses, share the grind, celebrate micro-wins, stay mission-driven 💪 What’s your go-to reset after a flop? #researchlife #labs #science Read more → is.gd/J6B4mB
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#molecularscience #researchlife #labmotivation #sciencecommunity | Marc Baaden
After my third failed simulation attempt this week, I found myself staring at page-long log message gibberish instead of the beautiful molecular simulation movie I'd hoped for. Sound familiar? Here's...
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Marc Baaden @baam93.bsky.social · 03/10/2025
Missing link in MD analysis: workflow-based, drag-and-drop pipelines to democratize complex tasks, improve reproducibility, and share templates—time to bridge the gap? 🔬✨ What do you think? #moleculardynamics #workflows Read more → is.gd/cAVZrt
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#molecularmodelling #workflows #computationalchemistry #bioinformaticstrends #scientificcomputing #moleculardynamics | Marc Baaden
A missing link in molecular dynamics analysis? The Workflow Divide in Scientific Computing - Have you ever noticed that workflow-based software suites like Orange are all the rage in bioinformatics a...
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Marc Baaden @baam93.bsky.social · 02/10/2025
Scientists are turning massive MD data into clear, actionable visuals, from classic 3D to VR—bridging complexity and decision-making. Read more → Frontiers review ↗ #moleculardynamics #visualization 🔬 What do you think? is.gd/1MefYo
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How Scientists Turn Massive Molecular Simulations into Clear, Useful Pictures | Marc Baaden
Ever wondered how scientists make sense of the billions of atoms and mountains of data churned out by molecular simulations? Our latest review in Frontiers in Bioinformatics dives into the art and sci...
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Marc Baaden @baam93.bsky.social · 01/10/2025
Turning jargon into clarity: start with relatable analogies, show real-world impact, and keep it visual ✍️🧶 What strategies help you make science click? Read more → link #scicomm #communication #proteinfolding is.gd/d3XH0m
is.gd
Last weekend, I found myself explaining my molecular research to an elderly person over tea and cookies. As I watched her eyes glaze over at terms like "protein folding" and "molecular ...
Last weekend, I found myself explaining my molecular research to an elderly person over tea and cookies. As I watched her eyes glaze over at terms like "protein folding" and "molecular dynamics," I re...
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Marc Baaden @baam93.bsky.social · 30/09/2025
My first big grant taught me this: the hard part isn’t science—it’s people. Lessons: 1) Lead with impact. 2) Relationships > cold PDFs. 3) Budget for serendipity. Great science = rigor + emotional intelligence. Humans still decide… for now. is.gd/a7i1jd
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Looking back at my first major grant application, I wish someone had pulled me aside and shared some hard-earned wisdom. After 25 years in molecular science, here's what I learned the hard way: T...
Looking back at my first major grant application, I wish someone had pulled me aside and shared some hard-earned wisdom. After 25 years in molecular science, here's what I learned the hard way: The s...
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Marc Baaden @baam93.bsky.social · 29/09/2025
Quantum vs classical for biomolecular sims: QC still too noisy for complex modeling - Classical dominates most workloads - Hybrids show near-term promise. Real progress: better error correction, small molecules working. Timeline: 3-5 years. Where do you see QC beating classical first? is.gd/DUNsNX)
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Trying to follow a little bit the quantum computing research, as it's getting slowly to the interesting bits. There is of course still a constant battle between quantum hype and quantum reality… |...
Trying to follow a little bit the quantum computing research, as it's getting slowly to the interesting bits. There is of course still a constant battle between quantum hype and quantum reality, espec...
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Marc Baaden @baam93.bsky.social · 28/09/2025
Drug design is a 4D puzzle (molecules move!). VR lets teams “see and touch” protein–ligand fits, making AI outputs clearer and decisions faster. We outline tools, use cases, and industry insights—plus what needs fixing (workflow integration, ergonomics, security). link.growkudos.com/1dwpqnnjk74
link.growkudos.com
Virtual reality for drug design: see, touch, and improve how medicines fit their targets
This article explains how virtual reality helps researchers visualize and interact with 3D, time‑changing protein–ligand structures. It outlines three interactive levels—examining, exploring, and mani...
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Marc Baaden @baam93.bsky.social · 28/09/2025
In ML for molecules/materials, the map matters as much as the model. Physics-inspired structural representations give you robustness and transferability—better predictions, wider generalization, reduced overfitting. Fresh review on arXiv: is.gd/UoRvld
is.gd
Physics-inspired structural representations for molecules and materials
The first step in the construction of a regression model or a data-driven analysis, aiming to predict or elucidate the relationship between the atomic scale structure of matter and its properties, inv...
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Reposted by Marc Baaden
Astropierre @astropierre.com · 24/09/2025
Suite à la migration de scientifiques et d'universitaires de X, Bluesky est devenue une l'une des alternatives. Afin d'évaluer sa viabilité/pertinence pour la communication scientifique, cette étude présente une analyse à grande échelle de la diffusion d'articles scientifiques sur Bluesky. 1/5
Image d'un téléphone sur lequel se trouve le logo et le nom de Bluesky.
En arrière-plan, un papillon blanc sur fond bleu
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Marc Baaden @baam93.bsky.social · 08/07/2025
link.growkudos.com/1emvj4oya68
link.growkudos.com
Ideas on broadly sharing scientific visualization experiences
Visualization is essential in the scientific discovery cycle and increasingly cross-disciplinary. It allows presenting complex data in a way that makes it more accessible. Here we use in particular th...
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Marc Baaden @baam93.bsky.social · 23/06/2025
Just discovered SingleFile—a browser extension that lets you save entire web pages as a single HTML file, resources and all. Offline access, zero fuss, and open source. Perfect for digital packrats and research nerds alike! #Productivity #OpenSource see www.getsinglefile.com
getsinglefile.com
SingleFile – Effortlessly Save and Preserve Web Pages
Save an entire web page with all its resources in a single HTML file with SingleFile.
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Marc Baaden @baam93.bsky.social · 22/06/2025
🤖 Weekend thought: Are we steering the AI ship, or is it quietly taking the wheel? Work is speeding up with every new tool, and I can’t tell if I’m more productive or just more… busy. Anyone else riding this workflow rollercoaster? How are you keeping your balance? #FutureOfWork #AIPerspectives
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Marc Baaden @baam93.bsky.social · 21/06/2025
Ever wondered what your lab partner is really looking at in VR? With GazeMolVR, you can literally see their gaze as you explore proteins together—spotlights, trails, the works. It’s like science telepathy for molecules. Remote collaboration just got a major upgrade: link.growkudos.com/1eu721i08ao
link.growkudos.com
GazeMolVR: See Where Others Look—Collaborative Protein Exploration in Virtual Reality
Ever wish you could see exactly what your colleague is looking at when discussing a complex 3D protein structure? GazeMolVR makes that possible. This tool puts two scientists (or students, or anyone!)...
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