Anna Mathioudaki @annamath.bsky.social · 25/03/2026Tissue organization is fundamental to how tissues function - yet in cancer such spatial patterns can progressively break down. Ever wondered how?! Check out our new study, where we investigate how lymphoma reshapes lymph node architecture 👀 152
Reposted by Anna MathioudakiDanai Vagiaki @danaivagiaki.bsky.social · 08/02/2026Delighted to present Latent Interaction Variational Inference (LIVI), a framework for trans-eQTL mapping at single-cell resolution that I developed during my PhD together with colleagues from @steglelab.bsky.social 1/n 12713
Anna Mathioudaki @annamath.bsky.social · 01/12/2025Abigail and Moritz are great mentors - I can only recommend this setup! Interested in spatial omics and brain tumors? Take a look at this postdoc opportunity 👇 000
Anna Mathioudaki @annamath.bsky.social · 06/10/2025Progressive glioblastoma or radiation-induced necrosis? 🧠 Hard to tell on MRI - but spatial transcriptomics tells a different story! Check out @zaira-sef.bsky.social's preprint for more! 040
Reposted by Anna MathioudakiEMBL-EBI @ebi.embl.org · 17/09/2025What if you could get a glimpse of the future of your health, today? Our scientists have developed a new generative AI model, trained using large-scale health records, that can estimate how human health may change over time. Watch to find out more. 🖥️🧬 43312
Reposted by Anna MathioudakiMikael Marttinen @mmarttinen.bsky.social · 26/05/2025SUM-seq out @natmethods.nature.com ! 🚀 Ultra-high-throughput Multiplexed snATAC+RNA Used to: ⏳ link temporal macrophage GRNs to immune disease genetics 🩸 map T cell regulatory landscapes 🧬✂️ dissect TF function in hiPSC differentiation via CRISPRi/a screens doi.org/10.1038/s41592-025-02700-8 🧵doi.orgSingle-cell ultra-high-throughput multiplexed chromatin and RNA profiling reveals gene regulatory dynamics - Nature MethodsThis work presents SUM-seq, an ultra-high-throughput method for co-profiling chromatin accessibility and gene expression in single nuclei across multiplexed samples, advancing the study of gene regula... 14517
Reposted by Anna MathioudakiStegle Lab @steglelab.bsky.social · 18/03/20251/ New preprint! 🍳 @elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins! doi.org/10.1101/2025... 36422
Reposted by Anna Mathioudakiverat-h.bsky.social @verat-h.bsky.social · 18/02/2025Thrilled to share that our work from Trumpp Lab @hi-stem @dkfz.bsky.social is out in Nature. We provide the first single-cell data on neurons infiltrating pancreatic tumors, offering new insights into cancer therapy. #cancerneuroscience @cn-hd.bsky.social www.nature.com/articles/s41... 25120
Reposted by Anna MathioudakiMick Milsom @milsommick.bsky.social · 05/02/2025New pre-print from Thomas Höfer, Daniel Hübschmann, @haas_lab and myself, with first authors @Esther_RCorrea @FloGrunschlager and Tamar Nizharadze doi.org/10.1101/2025... @DKFZ @NCT_HD @ChariteBerlin @hi_stem_lab BIH & MDCdoi.orgA kinetics-based model of hematopoiesis reveals extrinsic regulation of skewed lineage output from stem cellsResiding at the top of the hematopoietic hierarchy, long-term hematopoietic stem cells (HSCs) are capable of self-renewal and sustained blood cell regeneration. Over the past decades, single-cell and ... 15222