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Anna Mathioudaki

@annamath.bsky.social
85 followers 105 following 4 posts

Postdoc @DKFZ in the Gerstung group Previously PhD student @EMBL in the Zaugg group Exploring the recurrence of cell states across various cancers using spatial and single-cell omics 🧠 🩸

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Anna Mathioudaki @annamath.bsky.social · 25/03/2026
Tissue organization is fundamental to how tissues function - yet in cancer such spatial patterns can progressively break down. Ever wondered how?! Check out our new study, where we investigate how lymphoma reshapes lymph node architecture 👀
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Reposted by Anna Mathioudaki
Danai Vagiaki @danaivagiaki.bsky.social · 08/02/2026
Delighted to present Latent Interaction Variational Inference (LIVI), a framework for trans-eQTL mapping at single-cell resolution that I developed during my PhD together with colleagues from @steglelab.bsky.social 1/n
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Anna Mathioudaki @annamath.bsky.social · 01/12/2025
Abigail and Moritz are great mentors - I can only recommend this setup! Interested in spatial omics and brain tumors? Take a look at this postdoc opportunity 👇
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Anna Mathioudaki @annamath.bsky.social · 06/10/2025
Progressive glioblastoma or radiation-induced necrosis? 🧠 Hard to tell on MRI - but spatial transcriptomics tells a different story! Check out @zaira-sef.bsky.social's preprint for more!
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EMBL-EBI @ebi.embl.org · 17/09/2025
What if you could get a glimpse of the future of your health, today? Our scientists have developed a new generative AI model, trained using large-scale health records, that can estimate how human health may change over time. Watch to find out more. 🖥️🧬
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Mikael Marttinen @mmarttinen.bsky.social · 26/05/2025
SUM-seq out @natmethods.nature.com !
 🚀 Ultra-high-throughput Multiplexed snATAC+RNA Used to: ⏳ link temporal macrophage GRNs to immune disease genetics 🩸 map T cell regulatory landscapes 🧬✂️ dissect TF function in hiPSC differentiation via CRISPRi/a screens doi.org/10.1038/s41592-025-02700-8 🧵
doi.org
Single-cell ultra-high-throughput multiplexed chromatin and RNA profiling reveals gene regulatory dynamics - Nature Methods
This work presents SUM-seq, an ultra-high-throughput method for co-profiling chromatin accessibility and gene expression in single nuclei across multiplexed samples, advancing the study of gene regula...
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Stegle Lab @steglelab.bsky.social · 18/03/2025
1/ New preprint! 🍳 @elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins! doi.org/10.1101/2025...
Segger logoMessage passing intuition behind the segger’s link-prediction model and the network architecture
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verat-h.bsky.social @verat-h.bsky.social · 18/02/2025
Thrilled to share that our work from Trumpp Lab @hi-stem @dkfz.bsky.social is out in Nature. We provide the first single-cell data on neurons infiltrating pancreatic tumors, offering new insights into cancer therapy. #cancerneuroscience @cn-hd.bsky.social www.nature.com/articles/s41...
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Mick Milsom @milsommick.bsky.social · 05/02/2025
New pre-print from Thomas Höfer, Daniel Hübschmann, @haas_lab and myself, with first authors @Esther_RCorrea @FloGrunschlager and Tamar Nizharadze doi.org/10.1101/2025... @DKFZ @NCT_HD @ChariteBerlin @hi_stem_lab BIH & MDC
doi.org
A kinetics-based model of hematopoiesis reveals extrinsic regulation of skewed lineage output from stem cells
Residing at the top of the hematopoietic hierarchy, long-term hematopoietic stem cells (HSCs) are capable of self-renewal and sustained blood cell regeneration. Over the past decades, single-cell and ...
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