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elihei.bsky.social

@elihei.bsky.social
29 followers 23 following 1 posts
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elihei.bsky.social @elihei.bsky.social · 12/02/2026
Beautiful work from @steglelab.bsky.social and @danaivagiaki.bsky.social!
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Reposted by @elihei.bsky.social
danapeer.bsky.social @danapeer.bsky.social · 20/03/2025
From great collaborations come great things. Excited to share Segger, the solution to segmentation of spatial transcriptomics (ST) data, with the @steglelab.bsky.social and @moritzgerstung.bsky.social labs, spearheaded by the great Andrew Moorman and Elyas Heidari www.biorxiv.org/content/10.1...
biorxiv.org
Segger: Fast and accurate cell segmentation of imaging-based spatial transcriptomics data
The accurate assignment of transcripts to their cells of origin remains the Achilles heel of imaging-based spatial transcriptomics, despite being critical for nearly all downstream analyses. Current c...
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Reposted by @elihei.bsky.social
Stegle Lab @steglelab.bsky.social · 18/03/2025
1/ New preprint! 🍳 @elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins! doi.org/10.1101/2025...
Segger logoMessage passing intuition behind the segger’s link-prediction model and the network architecture
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Reposted by @elihei.bsky.social
Nav @naveed-ishaque.bsky.social · 17/03/2025
Accurate cell segmentation remains a major issue for spatial transcriptomics. Elyas Heidari and colleagues from the Gerstung, Pe'er and Stegle Labs released Segger, a new algorithm that uses GNN to model both transcripts and cells. More details in their preprint: www.biorxiv.org/content/10.1...
biorxiv.org
Segger: Fast and accurate cell segmentation of imaging-based spatial transcriptomics data
The accurate assignment of transcripts to their cells of origin remains the Achilles heel of imaging-based spatial transcriptomics, despite being critical for nearly all downstream analyses. Current c...
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Reposted by @elihei.bsky.social
Moritz Gerstung @moritzgerstung.bsky.social · 17/03/2025
Spatial transcriptomics holds great promise to understand biological tissue function, but the assignment of transcripts to cells has been a substantial bottleneck. For this reason, Elyas Heidari, a student in my lab and in @steglelab.bsky.social built segger. www.biorxiv.org/content/10.1...
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