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Chromatin labeling and imaging group

@andimaging.bsky.social
792 followers 2.3K following 309 posts

MPI for Multidisciplinary Sciences Fluorescent #probes for live-cell #nanoscopy: #STED, #MINFLUX and #confocal. We do the job, all of you judge if it is useful!

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Chromatin labeling and imaging group @andimaging.bsky.social · 23/06/2026
PolyP probe SiX-DPA-Zn, BRIGHT Red signal, works in cells, gels, in vitro assays and STED microscopy. Now on @biorxivpreprint.bsky.social www.biorxiv.org/content/10.6... . Congratulations to the authors Kenji and Ruta. #BioRxiv #ChemicalBiology #Fluorescence #Microscopy #Polyphosphate
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Chromatin labeling and imaging group @andimaging.bsky.social · 09/06/2026
Make HDAC6 visible again! 6SiR-C3-NextA is a selective far-red probe for imaging endogenous HDAC6 in living cells across diverse mammalian cell types. Done by @vanthang.bsky.social at @mpi-nat.bsky.social Now in JACS @pubs.acs.org pubs.acs.org/doi/10.1021/...
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Sandrine Lévêque Fort 🔬 @slfort.bsky.social · 05/06/2026
🔬 Happy to share our new paper showing that fluorophore brightness open a new dimension in SMLM microscopy ! Thanks to all authors @laurent-le.bsky.social S. K. Sreenivas @emmanuelfort.bsky.social ! @ismolab.bsky.social @instlangevin.bsky.social @cnrs.fr rdcu.be/fmIeD doi.org/10.1038/s415...
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Chromatin labeling and imaging group @andimaging.bsky.social · 15/05/2026
New preprint ! OptiFoot allows imaging of protein–nucleic acid interactions and places them into sequence context using Optical Genome Mapping, bridging super-resolution microscopy with single-molecule genomic analysis. #Genomics #Chromatin #Microscopy #bioRxiv www.biorxiv.org/content/10.6...
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Chromatin labeling and imaging group @andimaging.bsky.social · 15/04/2026
News & Views in @natchembio.nature.com : CenSpark offers a new perspective on microtubule organization—moving beyond tubulin to capture higher-order structure in live cells. #AcademicPublishing #ResearchImpact #Imaging www.nature.com/articles/s41...
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Chromatin labeling and imaging group @andimaging.bsky.social · 12/03/2026
Just published in JACS Au pubs.acs.org/doi/10.1021/... We show that the remarkable stability of proline-derived cofactors enabling efficient DNA labeling using methyltransferases—even under harsh conditions. Thanks to the contributors: Jonas and Rūta.
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Chromatin labeling and imaging group @andimaging.bsky.social · 27/01/2026
New Year, New Microscope! We just got upgraded to Abberior MIRAVA POLYSCOPE — confocal → MATRIX → STED. First test looks good, large field-of-view and nice STED images using our probes. @abberior.rocks @stefanhelllabs.bsky.social @mpi-nat.bsky.social #microscopy #livecell #fluorescence #bioimaging
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Chromatin labeling and imaging group @andimaging.bsky.social · 26/01/2026
New preprint! The remarkable stability of proline-derived cofactors opens efficient DNA labeling possibility using methyltransferases even at harsh conditions. www.biorxiv.org/content/10.6... Congratulations to Ruta and Jonas . #Biochemistry #DNA #Fluorescence
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Chromatin labeling and imaging group @andimaging.bsky.social · 29/12/2025
Wish all of You Merry Christmas and a Happy New Year!!! Enjoy AI-generated card for Chromatin labeling and imaging @andimaging.bsky.social
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Chromatin labeling and imaging group @andimaging.bsky.social · 17/12/2025
New preprint! We systematically evaluate red-shifted rhodamine-based DNA probes for in vivo imaging. Congratulations to Kamila and Shalini et al! Job done at @mpi-nat.bsky.social and @imprsgs.bsky.social ! Read more if you want to know which isomer is the best: www.biorxiv.org/content/10.6... .
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Chromatin labeling and imaging group @andimaging.bsky.social · 15/12/2025
6SiR-C3-NextA is bright far-red, cell-permeable probe for live-cell selective HDAC6 imaging. Congratulations to Van-Thang Nguyen et al. @vanthang.bsky.social from @imprsgs.bsky.social ! Developed at @mpi-nat.bsky.social nat.bsky.social and published on BioRxiv www.biorxiv.org/content/10.6... .
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Chromatin labeling and imaging group @andimaging.bsky.social · 13/12/2025
Celebrating 2nd PhD student of the group! 🎓 Van-Thang Nguyen (@vanthang.bsky.social) from the Chromatin Labeling & Imaging group successfully defended his thesis through the @imprsgs.bsky.social program at @mpi-nat.bsky.social. A smooth and impressive defense — and his paper is coming soon… 👀📄
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Chromatin labeling and imaging group @andimaging.bsky.social · 12/12/2025
We have introduced a new biocompatible sulfonium-based building block for generation of non-cytotoxic covalent fluorescent probes. The proof-of-concept paper is out in Nature Communications: rdcu.be/eUn8F Great job done by @mauvray.bsky.social at @mpi-nat.bsky.social Enjoy reading!
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Chromatin labeling and imaging group @andimaging.bsky.social · 25/04/2025
Happy DNA day!!! 😀 #DNA #Chromatin #Research
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Chromatin labeling and imaging group @andimaging.bsky.social · 08/03/2025
The updated Team of @andimaging.bsky.social . We will keep you posted with our newest developments.
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Marie Auvray @mauvray.bsky.social · 31/01/2025
Thrilled to share with you our work on covalent probes! By introducing a biocompatible sulfonium-based cleavable linker, we developed a series of fluorescent probes that can label covalently endogenous tubulin in various cell lines. www.biorxiv.org/content/10.1... #Chembio #FluorescenceFriday
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Chromatin labeling and imaging group @andimaging.bsky.social · 31/01/2025
We have introduced a new biocompatible sulfonium-based building block for generation of non-cytotoxic covalent fluorescent probes. The proof-of-concept paper is on BioRxiv: doi.org/10.1101/2025.01.27.635008 . Great job done by @MarieAuvray4 at @mpi_nat ! Enjoy reading!
doi.org
Biocompatible sulfonium-based covalent probes for endogenous tubulin fluorescence nanoscopy in live and fixed cells
Fluorescent probes enable the visualization of dynamic cellular processes with high precision, particularly when coupled with super-resolution imaging techniques that surpass the diffraction limit. Traditional methods include fluorescent protein fusion (e.g., GFP) or organic fluorophores linked to ligands targeting the protein of interest. However, these approaches often introduce functional disruptions or ligand-associated biological effects. Herein, we address these challenges by developing covalent fluorescent probes for endogenous tubulin, a critical cytoskeletal protein involved in processes such as cell movement, division, and biomolecule trafficking. Using well-known tubulin binder cabazitaxel and cell permeable fluorophore silicon-rhodamine—as a basis, we introduce a novel biocompatible cleavable linker containing a sulfonium center. This allowed the construction of the optimized probe , 6-SiR- o -C9-CTX , demonstrating excellent cell permeability, fluorogenic properties, and the ability to covalently label tubulin across various human cell lines. Importantly, the targeting moiety could be washed out while preserving tubulin staining, ensuring minimal disruption of tubulin function. This labeling technique is compatible with STED nanoscopy in both live and fixed cells, offering a powerful high-resolution imaging tool. ### Competing Interest Statement G.L. is a co-inventor on the patent (EP2748173B1 and US9346957B2, applicant EPFL) describing SiR and its derivatives.
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Chromatin labeling and imaging group @andimaging.bsky.social · 26/12/2024
Wish all of You Merry Christmas and a Happy New Year!!! Enjoy DALL-E AI-generated card for Chromatin labeling and imaging @AndImaging
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Chromatin labeling and imaging group @andimaging.bsky.social · 11/12/2024
Finally, we have the 1st PhD student Shalini Pradhan @ShaliniPradha19 from Chromatin labeling and imaging group from @IMPRS_GS program at @mpi_nat . It was challenging to make the full program in a single day, but we succeed.
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Chromatin labeling and imaging group @andimaging.bsky.social · 08/08/2024
Need to make perfect STED image? Check the primer below. Little secret: it has useful stuff in the Supplementary Information 😉 x.com/MethodsPrimers/status/1821500…
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Chromatin labeling and imaging group @andimaging.bsky.social · 02/08/2024
The updated Team of @AndImaging . We will keep you posted with our newest developments. Follow us: @MarieAuvray4 @J_Bucevicius @GerasRuta @ShaliniPradha19 @GeorgijKostiuk @Eyeshield_VN_21 @D_Bubnyte
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Chromatin labeling and imaging group @andimaging.bsky.social · 25/04/2024
Happy #DNADay! See how approx. two metres of DNA looks under #STORM and #STED microscopes.
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Chromatin labeling and imaging group @andimaging.bsky.social · 01/04/2024
The updated Team of @AndImaging . We will keep you posted with our newest developments. Follow us: @MarieAuvray4 @J_Bucevicius @GerasRuta @ShaliniPradha19 @GeorgijKostiuk @Eyeshield_VN_21 @D_Bubnyte @Marce_Claudia_
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Chromatin labeling and imaging group @andimaging.bsky.social · 25/12/2023
Merry Christmas and Happy New Year!!!
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Chromatin labeling and imaging group @andimaging.bsky.social · 04/12/2023
KTU alumnės chemikės kelias: nuo Marijampolės iki laboratorijos Vokietijoje, kurios departamento vadovas – Nobelio premijos laureatas ctf.ktu.edu/news/ktu-alumnes-chemik… #ktu
ctf.ktu.edu
KTU alumnės chemikės kelias: nuo Marijampolės iki laboratorijos Vokietijoje, kurios departamento vadovas – Nobelio premijos laureatas
KTU alumnė dabar studijuoja Makso Planko institute Vokietijoje, o jos departamento vadovas – Nobelio premijos laureatas.
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Chromatin labeling and imaging group @andimaging.bsky.social · 27/11/2023
Excellent collaboration with Laura Manelytė from @uni_regensburg : Biochemical and cellular insights into the Baz2B protein, a non-catalytic subunit of the chromatin remodeling complex academic.oup.com/nar/article/doi/10…
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Chromatin labeling and imaging group @andimaging.bsky.social · 03/11/2023
The updated Team of @AndImaging . We will keep you posted with our newest developments. Follow us: @MarieAuvray4 @J_Bucevicius @GerasRuta @SaladinLazare @ShaliniPradha19 @GeorgijKostiuk @Eyeshield_VN_21 @D_Bubnyte
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Chromatin labeling and imaging group @andimaging.bsky.social · 21/09/2023
All probes have to be used with caution. The improved design stains DNA brighter and is less toxic: doi.org/10.1039/C8SC05082A x.com/LSAjournal/status/17044576871…
doi.org
Rhodamine–Hoechst positional isomers for highly efficient staining of heterochromatin
Hoechst conjugates to fluorescent dyes are popular DNA stains for live-cell imaging, but the relationship between their structure and performance remains elusive. This study of carboxyrhodamine–Hoechst 33258 conjugates reveals that a minimal change in the attachment point of the dye has dramatic effects on t
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Chromatin labeling and imaging group @andimaging.bsky.social · 01/08/2023
We are developing fluorescent probes for live-cell far-field nanoscopy imaging. Here is our team:
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Chromatin labeling and imaging group @andimaging.bsky.social · 15/07/2023
Perfect application of our DNA probe: x.com/guillermo_orsi/status/1679854…
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Chromatin labeling and imaging group @andimaging.bsky.social · 31/03/2023
Hot question in Germany discussed by @BMBF_Bund : How long should be the postdoctoral phase of researchers? Have a nice weekend, and thanks for your opinion! #WissZeitVG #AcademicTwitter #Germany #research #postdocs
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Chromatin labeling and imaging group @andimaging.bsky.social · 24/03/2023
Our newest review paper about sequence-specific DNA labelling for fluorescence microscopy is out in Biosensors and Bioelectronics journal: t.co/6fZfHtFWKi . Enjoy reading! #Biology #Bioimaging #DNA #CRISPR #TALE #labeling #Fluorescence #Microscopy #Review
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Chromatin labeling and imaging group @andimaging.bsky.social · 17/03/2023
We enjoy microscopy of living cells stained with rhodamine's 4-isomers. Follow the dynamics of mitochondria (magenta), vimentin (green), tubulin (gray) and nucleus (blue). Need more information, read: doi.org/10.1038/s41467-023-36913-2 Happy #FluorescenceFriday and #StPatrickDay !
doi.org
A general highly efficient synthesis of biocompatible rhodamine dyes and probes for live-cell multicolor nanoscopy - Nature Communications
Rhodamines are privileged fluorescent dyes for labelling intracellular structures in living cells. Here, the authors present a facile protecting-group-free synthesis permitting generation of a wide range of symmetrical and unsymmetrical 4-carboxyrhodamines covering the whole visible spectrum.
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Chromatin labeling and imaging group @andimaging.bsky.social · 09/03/2023
Finally, our paper describing more rhodamine 4-isomers and >80 probes is out in @NatureComms : doi.org/10.1038/s41467-023-36913-2 Enjoy a four color live-cell dynamics of nucleus (magenta), mitochondria (cyan), lysosomes (yellow) and microtubules (gray). All stained with 4-isomers.
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Chromatin labeling and imaging group @andimaging.bsky.social · 22/02/2023
Wednesday's #questiontime: Where do you buy #fluorescent dyes and #probes for your #microscopy and other experiments? Thanks!!! #AcademicTwitter #research #shopping #ScienceTwitter
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Chromatin labeling and imaging group @andimaging.bsky.social · 20/02/2023
Monday Shopping question: Which company is the best to purchase the mitochondrial cristae dyes? Comment if you know any alternatives. Thanks to all in advance.
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Chromatin labeling and imaging group @andimaging.bsky.social · 03/02/2023
Label size is becoming an important issue in modern #fluorescence #microscopy or #nanoscopy. See size comparison of the commonly used tags and labeling approaches - antibody, GFP, Halo-tag, SNAP-tag, nanobody or small probe (5-610CP-Hoechst). Happy #FluorescenceFriday! #SciArt
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Chromatin labeling and imaging group @andimaging.bsky.social · 27/01/2023
Let's look at the molecular details of the tubulin probe's action. Enjoy computational model of the tubulin labeled with 4-TMR-LTX. The probe binds only to one subunit - beta-tubulin. Happy #FluorescenceFriday ! #SciArt #ChemTwitter #Fluorescence
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Chromatin labeling and imaging group @andimaging.bsky.social · 20/01/2023
Rhodamines exist in two forms: Zwitterion (fluorescent) and Spirolactone (non-fluorescent). Zwitterion is hydrophilic and likes water, but Spirolactone is hydrophobic and keeps its tail out of water. See our visualization of these two forms and enjoy #FluorescenceFriday !!!
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Chromatin labeling and imaging group @andimaging.bsky.social · 07/01/2023
According to current stats, we wrote the most viewed review article in @chemosens_MDPI of all time !!! 😃 x.com/MDPIOpenAccess/status/1605163…
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Chromatin labeling and imaging group @andimaging.bsky.social · 28/12/2022
Nice use of our tubulin probe!!! x.com/JakobsLab/status/160779211990…
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Chromatin labeling and imaging group @andimaging.bsky.social · 23/12/2022
Our group wish all of you Merry #Christmas and #HappyNewYear ! We wish all of you good health and peaceful cozy celebrations. Enjoy our postcard made of amazing structures which we observed in living cells. #AcademicTwitter #SciArt #FluorescenceFriday #Christmas2022
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Chromatin labeling and imaging group @andimaging.bsky.social · 16/12/2022
Live-cell imaging of EB3-GFP tagged is amazing. Enjoy and follow the plus ends of microtubules (yellow) in the network of tubulin (magenta). Happy #FluorescenceFriday ! #SciArt #ChemTwitter #Fluorescence
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Chromatin labeling and imaging group @andimaging.bsky.social · 09/12/2022
Please RT ! We are looking for a seriously motivated #PhD student to join in 2023. Join us, if you are passionate about chromatin labeling and imaging using #STED and #MINFLUX microscopy! Apply to @IMPRS_GS: t.co/it4nFJ3OKb #AcademicTwitter #PhDposition #Research
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Chromatin labeling and imaging group @andimaging.bsky.social · 07/12/2022
Planing or starting live-cell imaging experiments? You can find some guidance in the book chapter: Live-Cell Imaging: A Balancing Act Between Speed, Sensitivity, and Resolution link.springer.com/chapter/10.1007/9…
link.springer.com
Live-Cell Imaging: A Balancing Act Between Speed, Sensitivity, and Resolution
Live-cell imaging is perhaps one of the most exciting and challenging activities in the field of microscopy. It is exciting as recent developments in microscope technology have enabled scientists to visualize cellular and subcellular processes in real time down to...
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Chromatin labeling and imaging group @andimaging.bsky.social · 02/12/2022
Live-cell imaging is extremely entertaining. Enjoy dancing mitochondria (orange) in the network of tubulin (yellow) and vimentin (cyan) next to the nucleus (green). Happy #FluorescenceFriday! #SciArt #ChemTwitter #Fluorescence
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Chromatin labeling and imaging group @andimaging.bsky.social · 25/11/2022
Today we have made some rhodamine lava in a flask!!! Enjoy #FluorescenceFriday and have a nice weekend! #SciArt #ChemTwitter #Fluorescence
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Chromatin labeling and imaging group @andimaging.bsky.social · 24/11/2022
Question to audience: how many #ERC grants (#ERC_StG #ERC_CoG or #ERC_AdG) you have received? If the answer is not in the pool, put it in the comments. #AcademicTwitter #sciencecommunication #Funding
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Chromatin labeling and imaging group @andimaging.bsky.social · 18/11/2022
Nice colors of fluorescent dyes exited by chemical reaction!!! Yes, it's Chemiluminescence! We hope it also counts for #FluorescenceFriday #Science #SciArt #RealTimeChem #Chemtwitter
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Chromatin labeling and imaging group @andimaging.bsky.social · 11/11/2022
Back to #imaging and testing of lice-cell probes. #Centrosome and primary cilium in 3D #STED. Today is 11.11, and we wish you a happy #FluorescenceFriday ! #Science #SciArt #RealTimeChem #Chemtwitter
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