Existing notions of pangenome coordinates rely on hard-to-compute multiple sequence alignments. On the other hand, pangenome-wide exact unique matches (multi-MUMs) can be computed efficiently, and rep...

Existing notions of pangenome coordinates rely on hard-to-compute multiple sequence alignments. On the other hand, pangenome-wide exact unique matches (multi-MUMs) can be computed efficiently, and represent conserved stretches of columns in the underlying MSA. We introduce Shredtools, which uses mul …

The Human Pangenome Reference Consortium has generated 462 open-access reference genomes and a variation graph that represents differences among them, providing a substrate for pangenome-based analysi...

Even with federal grants largely restored, scientists say the Trump administration is still preventing those funds from reaching them. The consequences, they say, are already becoming clear.

Work at an Indiana University biology lab was halted amid federal scrutiny, affecting dozens of researchers. “The damage is significant and mounting,” the department chair told The Chronicle.

I wrote some code and compiled it using gcc with the native architecture option. Typically I can take this code and run it on an older computer that doesn't have AVX2 (only AVX), and it works fine...

PhD Project - A metagenomics approach to discover novel plastic degrading microbial pathways at University of Birmingham, listed on FindAPhD.com

Don't forget to mark the static binary executable: chmod +x vg Docker Image: quay.io/vgteam/vg:v1.72.0 Buildable Source Tarball: vg-v1.72.0.tar.gz Includes source for vg and all submodules. Use th...

We develop methods to build and analyze pangenomes, with applications in cancer and complex disease. Translational Genomics Research Institute, Phoenix, AZ.

Healthcare professionals must reject flawed racial generalisations, writes Jasmeen Kanwal Institutional racism in healthcare has received increased coverage in recent years, including in The BMJ ’s ...