Yuki Yamashita @ydymst.bsky.social · 06/07/2026I visited Oxford for Molecular Moss Workshop last week. I was exposed to a lot of nice research and people at the workshop! Oxford is a wonderful place as well. Thank you for every organizers and participants! À bientôt 👋 040
Reposted by Yuki YamashitaHugues Renault @huguesrenault.bsky.social · 10/03/2026#JobAlert #PhD 🌱 We are offering a PhD project to explore how transcription factors have shaped the evolution of plant protective barriers. We will support suitable candidates in applying to the @unistra.fr Graduate School competition. Interested? Please get in touch for more information! 03029
Yuki Yamashita @ydymst.bsky.social · 05/03/2026Thanks for your comments! As you said, dehydration of spores must be not enough because I immediately put them into a freezer. They may be broken from inside because of water freezing in a spore. Again, I appreciate your advice. 120
Yuki Yamashita @ydymst.bsky.social · 04/03/2026Another possibility comes up. I put spores into a refrigerator just after putting them into a tube with silica gel. Perhaps they may break from inside because of freezing… 020
Yuki Yamashita @ydymst.bsky.social · 02/03/2026I may find the cause of spore sterility... That may be high humidity of culture plate of Marchantia... 100
Yuki Yamashita @ydymst.bsky.social · 02/03/2026My colleague tells me that spores of M. polymorpha cultivated on agar medium are worse (not germinated etc...) than those on soil...... If so, my resource will be useless... 100
Yuki Yamashita @ydymst.bsky.social · 02/03/2026It seems to be fine that spore is stored at 4˚C, -30˚C or even -80˚C. 100
Yuki Yamashita @ydymst.bsky.social · 02/03/2026Perhaps, -30˚C was too harsh and 4˚C is appropriate...? 100
Yuki Yamashita @ydymst.bsky.social · 02/03/2026How should I keep spores of Marchantia polymorpha subsp. ruderalis? Although I have kept them at -30˚C for 1-2 months, they don't germinate so far. 232
Reposted by Yuki YamashitaAdrienne Roeder Lab @roederlab.bsky.social · 23/02/2026How moss makes a spiral of leaves through a rotating asymmetric division of the apical cell meristem--our paper is out @currentbiology.bsky.social today! @soestrauss.bsky.social Richard Smith, Joe Cammarata www.cell.com/current-biol...cell.comSpiral phyllotaxis in the moss Physcomitrium patens emerges from simple division rules of the apical cellCammarata et al. explore how cell division orientation generates phyllotaxis in moss with a unicellular meristem. They show that successive rotational divisions in the apical cell are precisely placed... 13913
Reposted by Yuki YamashitaNina Rønsted @ninaronsted.bsky.social · 11/02/2026We are hiring Tenure-track Assistant Professor and Curator in Bryology at Natural History Museum Denmark, Copenhagen. Duties are collection-based research, curation of >350.000 bryophytes, university teaching and public engagement. Deadline 23 March 2026. Start Jan 2027. lnkd.in/eEaXnNnb 074
Reposted by Yuki YamashitaIBMP | Institut de biologie moléculaire des plantes @ibmp-cnrs.bsky.social · 18/02/2026🎉 Congratulations to Katarina Kuusk on her successful PhD defense at IBMP (Feb 3, 2026)! Her work bridges structural bioinformatics & plant molecular biology to unravel dynamic P450 metabolons in soybean. 🌱 021
Yuki Yamashita @ydymst.bsky.social · 01/01/2026Happy new year! I wish this year will become one of the best year for you! Me? I just do what I have to do. 010
Yuki Yamashita @ydymst.bsky.social · 16/10/2025I listened to a seminar related to this work. Membrane topology inversion is very interesting. doi.org/10.1126/scie...doi.orgMembrane topology inversion of GGCX mediates cytoplasmic carboxylation for antiviral defenseMitochondrial antiviral signaling protein (MAVS) is an adaptor involved in antiviral immunity, but its regulation is not fully understood. We identified carboxylation of MAVS by vitamin K (VK)–depende... 000
Yuki Yamashita @ydymst.bsky.social · 09/10/2025Bryophytes hold a larger gene family space than vascular plants | Dong et al. (2025) Nature Plants rdcu.be/eKcyO This is definitely interesting and important to bryophyte research. I feel this way, but I haven't finished reading it yet. I have no idea when I will finish reading this paper. 😅rdcu.beBryophytes hold a larger gene family space than vascular plantsNature Genetics - A super-pangenome analysis incorporating 123 newly sequenced bryophyte genomes reveals that bryophytes exhibit a larger number of unique and lineage-specific gene families than... 000
Yuki Yamashita @ydymst.bsky.social · 22/08/2025Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant | Cerda-Herrera (2025) G3 doi.org/10.1093/g3jo...doi.orgChromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plantAbstract. We present the first chromosome-level genome assembly and annotation for the genus Cuscuta, a twining and leafless parasitic plant of the morning 010
Reposted by Yuki YamashitaInternational Parasitic Plant Society - IPPS @parasiticplants.bsky.social · 21/08/2025Announcement of a chromosome-level assembly and annotation of #parasiticplant Cuscuta campestris 023
Yuki Yamashita @ydymst.bsky.social · 21/08/2025Plant organ modulates morphological constraints of insect-induced galls: evidence from citizen science data | Bessho-Uehara et al. (2025) Scientific Reports doi.org/10.1038/s415...doi.orgPlant organ modulates morphological constraints of insect-induced galls: evidence from citizen science data - Scientific ReportsScientific Reports - Plant organ modulates morphological constraints of insect-induced galls: evidence from citizen science data 000
Yuki Yamashita @ydymst.bsky.social · 21/08/2025To gall researchers, the two papers of my previous supervisor have been out! I am very happy to somewhat contribute one of them. Please check it out! Parasitic-Plant Parasite Rewires Flowering Pathways to Induce Stem-Derived Galls | Udandarao et al. (2025) Plant Direct doi.org/10.1002/pld3...doi.orgParasitic‐Plant Parasite Rewires Flowering Pathways to Induce Stem‐Derived GallsGall-inducing insects manipulate host plant development, redirecting cellular fate and physiological processes to form novel structures. This phenomenon is even more intriguing when the host itself i... 110
Reposted by Yuki YamashitaNick Desnoyer @nickdesnoyer.bsky.social · 11/08/2025To promote the collection, I’ve launched a designer clothing line where synthetic biology meets aesthetics. I will give out 100 free limited edition shirts to the first who retweet and order with their handle in the name! Available here → nickdesnoyer.com 🧵(6/7) 72527
Yuki Yamashita @ydymst.bsky.social · 10/08/2025I went to Mt. Norikura at northern Japanese alps last weekend for TA works. The environment was very unique and many plants I’ve never seen were there. Going back to the base, I saw the dynamic changes of the vegetation from alpine zone to subalpine zone. It was a good experience for me. 020
Yuki Yamashita @ydymst.bsky.social · 01/07/2025Parts of gemma development and the timing to determine the dorsoventrality are especially interesting. Besides, I learned the importance of examining all three planes; frontal, sagittal, and transverse, to see a whole picture of gene expression pattern in 3D structure. 000
Yuki Yamashita @ydymst.bsky.social · 01/07/2025Three-dimensional anatomy and dorsoventral asymmetry of the mature Marchantia polymorpha meristem develops from a symmetrical gemma meristem | Spencer et al. (2024) Development doi.org/10.1242/dev....doi.orgThree-dimensional anatomy and dorsoventral asymmetry of the mature Marchantia polymorpha meristem develops from a symmetrical gemma meristemSummary: The anatomy, symmetry and gene expression of the Marchantia polymorpha meristem changes during its lifespan, providing a foundational framework for identifying previously unreported mechanism... 110
Yuki Yamashita @ydymst.bsky.social · 22/06/2025Naming is caring. Nat. Plants 11, 1091–1092 (2025). doi.org/10.1038/s414...doi.orgNaming is caring - Nature PlantsWe can now carry in our pockets applications that accurately identify the plants around us. These are interesting tools for researchers, but they also help everyone to appreciate the diversity of the ... 000
Yuki Yamashita @ydymst.bsky.social · 22/06/2025Very interesting work based on careful and precise observation. I like this and really learn a lot from this. 000
Yuki Yamashita @ydymst.bsky.social · 22/06/2025Reproducibly oriented cell divisions pattern the prothallus to set up dorsoventrality and de novo meristem formation in Marchantia polymorpha | Wallner and Dolan (2023) Current Biology www.cell.com/current-biol...cell.comReproducibly oriented cell divisions pattern the prothallus to set up dorsoventrality and de novo meristem formation in Marchantia polymorphaWallner and Dolan describe the cell division patterns that form the flat Marchantia prothallus from a single-celled spore. A meristem with an apical stem cell develops on the prothallus to initiate in... 110
Yuki Yamashita @ydymst.bsky.social · 11/06/2025車軸藻クレブソルミディウムのゲノムから見た植物の陸上化 | 堀, 太田 (2016) BSJ Review bsj.or.jp/jpn/general/...bsj.or.jp 000
Yuki Yamashita @ydymst.bsky.social · 11/06/2025植物の上陸作戦=シャジクモの辿った道 | 坂下 BSJ Review (2010) bsj.or.jp/jpn/general/...bsj.or.jp 000
Yuki Yamashita @ydymst.bsky.social · 06/06/2025In-insect synthesis of oxygen-doped molecular nanocarbons | Science www.science.org/doi/10.1126/... This research is super interesting! An insect is like a function. Insect(an organic compound) = a new organic compoundscience.orgIn-insect synthesis of oxygen-doped molecular nanocarbonsMany functional molecules and materials have been produced with organic chemistry or with in vitro enzymatic approaches. Individual organisms, such as insects, have the potential to serve as natural r... 021
Yuki Yamashita @ydymst.bsky.social · 06/05/2025This review is educational to see the field of plant cell biology, especially cell division, the growth and the fate. doi.org/10.1093/plce...doi.orgCycling in a crowd: Coordination of plant cell division, growth, and cell fatePlant cell cycle and division are linked to specific cell fates and respond to growth-related cues, such as metabolic state, cell size, cell shape, and mec 021
Yuki Yamashita @ydymst.bsky.social · 06/05/2025nph.onlinelibrary.wiley.comPhyllotaxis: is the golden angle optimal for light capture?See also the Commentary on this article by Sicard, 225: 13–15. 000
Yuki Yamashita @ydymst.bsky.social · 10/04/2025I found Anthoceros agrestis at my university! Tiny horns! 011
Yuki Yamashita @ydymst.bsky.social · 07/04/2025This reading helps us to think about how we manage and drive our research. www.nature.com/articles/s41...nature.comOpenness guides discovery - Nature BiotechnologyNature Biotechnology - Openness guides discovery 000
Yuki Yamashita @ydymst.bsky.social · 01/04/2025Finally, I start my PhD research at Hiroshima University supervised by Dr. Shimamura! Bon voyage 🚀🚀🚀 060
Reposted by Yuki YamashitaAlexis Licht @alexislicht.bsky.social · 07/03/2025Dear US colleagues, In response to the Trump administration, my university @univ-amu.fr is setting up a new program dedicated to welcoming American scientists wishing to pursue their work in France. There are several M$ in the budget. www.univ-amu.fr/en/public/ac...univ-amu.frSafe Place For Science: Aix Marseille Université ready to welcome American scientists | Aix Marseille UniversitéIn a context where some scientists in the United States may feel threatened or hindered in their research, our university is announcing the launch of the Safe Place For Science program, dedicated to w... 4423831008
Reposted by Yuki YamashitaHugues Renault @huguesrenault.bsky.social · 06/01/2025Dear French and Japanese colleagues, mark your calendars! We are organising the bilateral France-Japan "Frontiers in Plant Biology" symposium. Date: November 19-21, 2025 Location: Strasbourg More information soon! #plantscience 13427
Yuki Yamashita @ydymst.bsky.social · 21/11/2024Meiosis in flowering plants and other green organisms | Harrison et al. (2010) J. Exp. Bot. doi.org/10.1093/jxb/...doi.org 020
Yuki Yamashita @ydymst.bsky.social · 19/11/2024Given the recent advances in omics technologies and bioinformatics software, if I have enough money, I can do almost anything we want to do. Therefore I have to think hard and deeply about what is interesting, what is important, and what is what I want to dedicate my life to. 000
Yuki Yamashita @ydymst.bsky.social · 28/09/2024Ideally, is it possible to assign quantitative volumes to all factors controlling the development in whatever plants you are researching on? I want to use MorphoGraphX to reconstruct its complete development process in silico. 000
Yuki Yamashita @ydymst.bsky.social · 04/05/2024doi.org/10.1038/s414... 理想的に言えば、発生に関わる全ての要素に定量的数値を与えることができる?(=分子Aは時期BにlongitudinalにC、mediolateralにD、細胞を変化させる的な)MorphGraphX、面白い。doi.orgTwo orthogonal differentiation gradients locally coordinate fruit morphogenesis - Nature CommunicationsThe coordination of cellular behaviors is essential for proper organogenesis. Here the authors show that fruit development in Arabidopsis is governed by time-shifted differentiation gradients that act... 000