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Viljami Sairanen

@viljamisairanen.bsky.social
455 followers 494 following 101 posts

Medical Physicist | PhD | Entrepreneur Researching brain models (dMRI) at Baby Brain Activity Center of the University of Helsinki, www.babacenter.fi Department chief physicist in radiology at Hämeenlinna Central Hospital, Finland

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Viljami Sairanen @viljamisairanen.bsky.social · 18h
Party time! 🥳Just received email "Congratulations! On behalf of the Editorial Team of Aperture Neuro, I am pleased to inform you that your manuscript, Voxel-wise function-structure coupling with diffusion-weighted and functional MRI, has been accepted for publication." More info soon!
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ninnawildheart @ninnawildheart.bsky.social · 18/09/2026
On nimittäin kampanjaslogan kohdallaan. ✨
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Viljami Sairanen @viljamisairanen.bsky.social · 14/06/2026
People at #OHMB @ohbmofficial.bsky.social Why neuroscientist talk of structure-function coupling and not function-structure coupling? The latter is in alphabetical order. Dash does not imply directionality anyway. So why?! 🤯🤯🤯 I need an explanation
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OHBM Brain Art @ohbmbrainart.bsky.social · 03/06/2026
🎨 Brain Art Competition 2026 – Call for Submissions The OHBM Brain Art Special Interest Group invites submissions for the 2026 Brain Art Competition by June 10, 2026 🔗 Submit here: forms.gle/yLEfytnZYd36... Winners will be announced at the OHBM 2026 Closing Ceremonies and featured online.
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Viljami Sairanen @viljamisairanen.bsky.social · 09/06/2026
🧠 Presenting at @ohbmofficial.bsky.social - Poster #0468 Mon June 15 | 14:45–15:45 Tue June 16 | 13:30–14:30 My recent work asks: We know which brain regions are functionally connected, but which structural pathways support those relationships? (1/4) doi.org/10.1162/NETN... #OHBM #Neuroimaging
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International Society for Tractography @tractography.bsky.social · 03/06/2026
1/4 Got questions about diffusion MRI or tractography? Join the first worldwide Ask Us Anything hosted by the International Society for Tractography on June 23, 2026. 18 experts. 3 sessions. Multiple time zones. Details & registration: event.fourwaves.com/aua2026/pages #Tractography
event.fourwaves.com
Ask Us Anything (AUA)
Join Ask Us Anything (AUA), June 23, 2026. Learn more on Fourwaves.
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Viljami Sairanen @viljamisairanen.bsky.social · 26/05/2026
youtu.be/0flvHMT48vg Updated animation about my recent work on function-structure coupling if human brain networks #Neuroimaging #Neuroscience #Brain #MRI #Connectivity
youtu.be
The Function-Structure Coupling of the human brain networks
YouTube video by Viljami Sairanen
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OHBM Trainees @ohbmtrainees.bsky.social · 29/04/2026
Want to sharpen your Python skills and build libraries like a pro? In the next workshop in our 2026 “How-To” series we welcome Ariel Rokem (@arokem.org; University of Washington): 🧠 Designing and implementing Python libraries 📅 19 May 2026 🔗 Register: forms.gle/qeoCoYMdVxGL...
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Viljami Sairanen @viljamisairanen.bsky.social · 13/05/2026
Mitä reittiä aivojen viestit kulkevat? Uusi menetelmä etsii vastausta www.helsinki.fi/fi/uutiset/a...
helsinki.fi
Mitä reittiä aivojen viestit kulkevat? Uusi menetelmä etsii vastausta | Helsingin yliopisto
Joet ja verisuonet löytävät luonnostaan tehokkaimman reitin. Helsingin yliopiston tutkija sovelsi samaa periaatetta aivoihin ja kehitti uuden tavan tarkastella aivoverkostoja.
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Nikola Stikov @stikov.bsky.social · 11/05/2026
Hello Cape Town! After the first two volumes of my ISMRM blues series, which were critical of the society, I expected silence from the ISMRM. Instead, they showed class by inviting me to speak on the very topic that drew the most attention in my critique: bringing MRI to developing countries. 1/n
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NeuroImaging Tools and Resources Collaboratory @nitrc.bsky.social · 08/05/2026
Open data = open science. NITRC-IR gives researchers access to shared neuroimaging datasets — MRI, fMRI, DTI, and more — to accelerate discovery without starting from scratch. 🗂️ #OpenData #OpenScience #Neuroimaging
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Viljami Sairanen @viljamisairanen.bsky.social · 06/05/2026
Early access! From nodes to pathways: an edge-centric model of brain function-structure coupling via constrained Laplacians direct.mit.edu/netn/article... #neuroskyence #neuroimaging #brain #connectivity #mri
direct.mit.edu
From nodes to pathways: an edge-centric model of brain function-structure coupling via constrained Laplacians
Abstract. Understanding how functional relationships relate to the brain’s structural architecture remains a central challenge in network neuroscience. Many Laplacian-based approaches describe functio...
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Viljami Sairanen @viljamisairanen.bsky.social · 21/04/2026
6 years in making - a new paper coming out soon (finally!) 🥳
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Viljami Sairanen @viljamisairanen.bsky.social · 08/04/2026
anxious anticipation
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Viljami Sairanen @viljamisairanen.bsky.social · 10/02/2026
Not a desk reject! 🥳
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Viljami Sairanen @viljamisairanen.bsky.social · 22/01/2026
Preprint From nodes to pathways: an edge-centric model of brain structure-function coupling via constrained Laplacians www.biorxiv.org/content/10.1...
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Viljami Sairanen @viljamisairanen.bsky.social · 17/01/2026
The feeling when you notice had made an typo in the title of a preprint 😅🤦‍♂️ thankfully the kind people at bioarxiv told me that it should get fixed automatically because title is correct in the pdf. www.biorxiv.org/content/10.1...
biorxiv.org
rom nodes to pathways: an edge-centric model of brain structure-function coupling via constrained Laplacians
Understanding how functional interactions emerge from the brain structure remains a central challenge in network neuroscience. Structural connectivity (SC), derived from diffusion MRI tractography, provides the anatomical scaffold, whereas functional connectivity (FC), measured with fMRI, EEG, or MEG, reflects dynamic neural interactions that often extend beyond direct anatomical links. Existing spectral graph theoretical models successfully capture indirect interactions but largely remain node-centric, leaving the contributions of individual structural pathways implicit. This work introduces an edge-centric framework for structure-function coupling that reformulates the graph Laplacian as a constrained flow problem grounded in spectral graph theory and realized numerically through Modified Nodal Analysis (MNA). Functional relationships are modeled as nodal constraints (voltage sources), structural connections as conductances, and the resulting nodal potentials induce edge-wise flows (currents) that explicitly quantify how functional signals are distributed in anatomical network. This formulation preserves the theoretical foundations of Laplacian eigenmodes while extending them to compute interpretable, pathway-specific measures of functional signal flow. As a proof-of-concept, the framework is demonstrated in three settings: (i) a single-subject Default Mode Network example illustrating tractography filtering and streamline-wise functional currents, (ii) a ground-truth diffusion phantom showing accurate recovery of both direct and indirect pathways, and (iii) a group-level analysis of 207 Human Connectome Project subjects yielding a sparse, current-based connectome complementary to conventional SC and FC matrices. By bridging spectral graph theory and circuit analysis, this approach provides a mathematically consistent and physically interpretable method for mapping functional interactions onto structural brain networks, with practical applications in tractography filtering, network analysis, and multimodal connectomics. ### Competing Interest Statement The authors have declared no competing interest.
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Maxime Chamberland @maxchamb.bsky.social · 17/12/2025
🧠New preprint! What if cortical geometry alone already encodes much of white-matter organization? We introduce a subject-specific, reversible cortical folding model that unfolds and refolds the brain from a single T1w MRI; no diffusion, no ML. www.biorxiv.org/content/10.6...
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Viljami Sairanen @viljamisairanen.bsky.social · 03/12/2025
Getting a paper status to "under review" after six desk rejects feels already like a victory 🥳 I'm quite sure that even the infamous reviewer two can't be more offensive than some of the editors so far 😅
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Viljami Sairanen @viljamisairanen.bsky.social · 07/11/2025
Oletko miettinyt, mikä ihme on #sairaalafyysikko tai, mitä kummaa moinen tekee? Tässäpä sinulle hieno yhteenveto alasta: youtu.be/HlFP2CqTiAs?... Iloista sairaalafysiikan päivää!
youtu.be
Mitä sairaalafyysikot tekevät? (ENG subs)
YouTube video by Sairaalafyysikot
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Viljami Sairanen @viljamisairanen.bsky.social · 18/09/2025
Is this a tractogram of the default mode network or a Romulan warship from Star Trek?
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Anton Tokariev @antontokariev.bsky.social · 15/09/2025
📢 Excited to share our new paper from Synnöve Carlson’s team! We show how prematurity impacts higher-order brain network dynamics in school-aged children and adolescents: doi.org/10.1016/j.ne... #Neuroscience #Brain #Prematurity #BrainHealth #Neurodevelopment
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Viljami Sairanen @viljamisairanen.bsky.social · 28/07/2025
Gambling in science vol 56: this time I refused to review a paper in MDPI journal as they practice gambling (reviewer has a random chance to obtain reduction on their APC fee). What do you think? Is this gambling or are you just wrong?
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Jenni Räikkönen @jenniraikkonen.fi · 26/06/2025
Onko edessä ensimmäinen konferenssi? Etkö oikein tiedä, mitä siellä tapahtuu tai mitä esimerkiksi työpaja tarkoittaa? Ei hätää. Blogissani selitän konferenssiin liittyvää sanastoa.
jenniraikkonen.fi
Konferenssisanastoa - Nuoren tutkijan elämää
Miten konferenssiesitelmä eroaa posteriesitelmästä? Tai mitä tarkoittaa konferenssin työpaja? Oma mielikuvani on, että työpajassa korjataan ja rakennetaan tai upotetaan kädet saveen. Konferenssin työp...
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Viljami Sairanen @viljamisairanen.bsky.social · 31/05/2025
1/5 Loot boxes of academic publishing? A journal asked me to review a paper. The journal "recognizes reviewers’ contributions via APC waivers". If you review 2-4 papers per year, you will get 40% off the (insanely high) pay-to-win (publish) fee. Basically, this is the same as playing at casino...
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Steve Smith @fmrib-steve.bsky.social · 10/04/2025
Does anyone with a Siemens Trio have the gradient distortion correction .coef file they'd be willing to send us? Thanks!
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Viljami Sairanen @viljamisairanen.bsky.social · 28/02/2025
Hyvinvointialueilla tehdään myös tiedettä. Tai ainakin minä teen. Tällä kertaa osana kansainvälistä poppoota ja kohteena 16000 ihmisen magneettikuvat 🧠 omahame.fi/fi/w/tutkimu...
omahame.fi
Tutkimus: Potilaan liike sotkee magneettikuvia – uudet menetelmät mahdollistavat sotkun siivoamisen eikä potilasta tarvitse välttämättä kuvata uudestaan
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Matt Cieslak @cieslakmatt.bsky.social · 13/02/2025
It's hard to overstate what a big deal this paper is: onlinelibrary.wiley.com/doi/10.1002/.... Head motion in dMRI is NOT like head motion in BOLD.
onlinelibrary.wiley.com
Head Motion in Diffusion Magnetic Resonance Imaging: Quantification, Mitigation, and Structural Associations in Large, Cross‐Sectional Datasets Across the Lifespan
We characterized motion during diffusion MRI scans across 16,995 image sessions and find that (1) modern preprocessing pipelines effectively mitigate motion to the point where biases are not detectab....
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Viljami Sairanen @viljamisairanen.bsky.social · 12/02/2025
Fresh from the press! Head Motion in Diffusion Magnetic Resonance Imaging: Quantification, Mitigation, and Structural Associations in Large, Cross-Sectional Datasets Across the Lifespan Thanks to Kurt Schilling et al. for including me! dx.doi.org/10.1002/hbm.... #dMRI
dx.doi.org
Head Motion in Diffusion Magnetic Resonance Imaging: Quantification, Mitigation, and Structural Associations in Large, Cross‐Sectional Datasets Across the Lifespan
We characterized motion during diffusion MRI scans across 16,995 image sessions and find that (1) modern preprocessing pipelines effectively mitigate motion to the point where biases are not detectab...
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Krish D. Singh @magnetokrishio.bsky.social · 06/02/2025
We are very excited to announce the open release of a new 170 participant dataset: Linked MEG, TMS, multimodal 3T MRI, 7T MRI, Connectom MRI, cognitive /questionnaire data. Immense effort from a fabulous CUBRIC team. Paper by Carolyn McNabb et al: doi.org/10.1038/s415...
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Viljami Sairanen @viljamisairanen.bsky.social · 26/01/2025
Silly ChatGPT 🤭
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Department of Imaging Neuroscience @imagingneuroucl.bsky.social · 24/01/2025
Happy 30th birthday year to SPM!! 🎈🍰 To get the party started, we are delighted to announce SPM 25.01, a major new version of the open-source neuroimaging software. Read the preprint to discover what's new arxiv.org/pdf/2501.12081 and download SPM for free from Github github.com/spm/spm/rele...
arxiv.org
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Viljami Sairanen @viljamisairanen.bsky.social · 19/12/2024
Oletko aina tehnyt joulutortut väärin? Laitetaanpa lusikka tähänkin luumusoppaan. Muotoillaan klassikkoleivonnainen uudelleen, jolloin myös luumumarmeladi on mahdollista levittää tasaisemmin. Näin joka haukkaus maistuu yhtä hyvälle! Tässä joululahjani suomelle: joulutortini glassati
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Viljami Sairanen @viljamisairanen.bsky.social · 01/12/2024
1.5 years ago I asked the Finnish Publication Forum to list @imagingneurosci.bsky.social as a new journal. Journals start always on level 0. I asked them to review the journal and they rised it to level 1. Now Finnish university libraries can start to pay APC fees of Imaging Neuroscience finally!
jfp.csc.fi
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Viljami Sairanen @viljamisairanen.bsky.social · 25/11/2024
Hey to all the new people here: please write _something_ to your bio (topic of your research, interests etc). Makes it easier to decide to follow back or not. This is not only to avoid bots but also quite interesting to learn what people are doing!
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Viljami Sairanen @viljamisairanen.bsky.social · 21/11/2024
Now that this platform seems to be (blue)skyrocketing, it is probably good time to share my research topic: cracking the brain with #dMRI #MRI #minätutkin youtu.be/8lw-wkL3vXY?...
youtu.be
Cracking the brain with dMRI
YouTube video by Viljami Sairanen
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ISMRM @ismrm.bsky.social · 18/11/2024
Hello there! #ismrm
media.tenor.com
a man in a brown robe with a hood on his head is standing in the desert .
Alt: Old Ben Kenobi removing his hood and saying, "Hello there."
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Rolle Laukkarinen @rolle.social · 16/03/2024
Mukavaa nähdä eettisen ja epäkaupallisen somen kehittyvän. Seuraavana vuorossa avoimen lähdekoodin TikTok: loops.video Avoimen lähdekoodin IG meiltä löytyykin jo: pixelfed.org Ja tietysti Mastodon mementomori.social Siistiä nähdä, että pian näitä kaikkia voi käyttää päikseen vaikka Threadsista.
loops.video
Loops by Pixelfed
Loops, explore and share short videos on the fediverse. Available soon!
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Viljami Sairanen @viljamisairanen.bsky.social · 07/03/2024
Three years from idea to preprint but here it is: a macro-scale model combining functional and structural connectivity matrices of the human brain networks. This is a technical report so not applied to any clinical data yet. www.biorxiv.org/content/10.1... #neuroimaging #fMRI #dMRI #connectivity
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 06/03/2024
Combining function and structure in a single macro-scale connectivity model of the human brain www.biorxiv.org/content/10.1101/202…
biorxiv.org
Combining function and structure in a single macro-scale connectivity model of the human brain https://www.biorxiv.org/content/10.1101/2024.03.03.583186v1
Combining the macro-scale functional and structural connectivity matrices of the human brain could p
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Viljami Sairanen @viljamisairanen.bsky.social · 08/03/2024
Päivitetään tämä suomeksikin eli #Minätutkin aivorakenteita ja esitän tässä uuden tavan yhdistää toiminnalliset aivomittaukset aivorakennemalleihin. Toimii ainakin teoriassa tosi hyvin, mutta nähtäväksi jää tuleeko tästä apua Alzheimerin ym. tutkimisessa.
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Viljami Sairanen @viljamisairanen.bsky.social · 08/03/2024
Here is an example in Python how to combine functional and structural #brain connectivity (fc&sc) matrices: github.com/vilsaira/FSC Surprisingly simple to apply: > from fsc import fsc > fscm = fsc(V=fc, R=sc).get_I() biorxiv.org/content/10.1... #dipymri #Connectivity #fMRI #dMRI
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Viljami Sairanen @viljamisairanen.bsky.social · 07/03/2024
Three years from idea to preprint but here it is: a macro-scale model combining functional and structural connectivity matrices of the human brain networks. This is a technical report so not applied to any clinical data yet. www.biorxiv.org/content/10.1... #neuroimaging #fMRI #dMRI #connectivity
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Imaging Neuroscience @imagingneurosci.bsky.social · 08/12/2023
Hello World! We have now received 500 submissions to Imaging Neuroscience, with 50 of these already published. direct.mit.edu/imag/issue Huge thanks for your support in moving our field away from for-profit publishers.
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Russ Poldrack @russpoldrack.org · 21/11/2023
Only 0.5% of neuroscience studies look at women’s health. Here’s how to change that - wonderful piece by @emilyjacobs.bsky.social www.nature.com/articles/d41...
nature.com
Only 0.5% of neuroscience studies look at women’s health. Here’s how to change that
A new initiative challenges the severe neglect of women’s brain health from puberty through to pregnancy and menopause. A new initiative challenges the severe neglect of women’s brain health from ...
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INVEST Research Flagship Centre @invest-flagship.bsky.social · 17/11/2023
📢 Etsimme erikoistutkijaa tai väitöskirjatutkijaa, joka hallitsee tilastolliset metodit 📉📈 Lue lisää ja hae 👇 #AcademicSky ats.talentadore.com/apply/erikoi...
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Eneko Uruñuela @enekourunuela.com · 09/11/2023
Delighted to share that our work has been published in Medical Image Analysis. Novel multivariate formulation for Paradigm Free Mapping: • Exploits spatial information. • Avoids selection of the reg parameter. • New metric: probability of event being true. #neuroimaging #neuroskyence
sciencedirect.com
Whole-brain multivariate hemodynamic deconvolution for functional MRI with stability selection
Conventionally, analysis of functional MRI (fMRI) data relies on available information about the experimental paradigm to establish hypothesized model…
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Marc L Seal @parkvillegeek.bsky.social · 13/11/2023
Functional parcellation of the neonatal brain | #bioRxiv www.biorxiv.org/content/10.1...
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Viljami Sairanen @viljamisairanen.bsky.social · 11/11/2023
@jennypaananen.bsky.social rupesi kiinnostamaan, että mitäs sinä tutkit? Syy se, että mun pitäisi vuorovaikuttaa terveydenhuollossa useiden eri ammattikuntien kanssa, mutta fyysikon pohjakoulutus kattaa lähinnä neljä perusvuorovaikutusta eikä yksikään niistä auta selittämään kirurgille asioita 😁
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Danyal Akarca @danakarca.bsky.social · 07/11/2023
We have x4 Postdoc positions @ Cambridge, @ the fantastic MRC Cognition & Brain Sciences Unit, working on exciting comp neuro, imaging and NeuroAI projects… w/ @duncanastle.bsky.social, Petra Vertes + others! Link here: jobs.cam.ac.uk/job/43796/ If you have any questions, hmu! (Do plz share!)
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