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VIAMD

@viamd.bsky.social
46 followers 26 following 16 posts

VIAMD is an interactive analysis tool for MD. github.com/scanberg/viamd. Article: pubs.acs.org/doi/10.1021/acs.jcim.3…. Wiki: github.com/scanberg/viamd/wiki Tutorial playlist: bit.ly/4aRsPrh #compchem

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Reposted by VIAMD
VeloxChem @veloxchem.bsky.social · 15/06/2026
🔬 Registration is open for Computational Chemistry for Experimental Chemists (14–18 Sept 2026, Toruń, Poland). Visit ccec.umk.pl. Learn computational chemistry fundamentals, thermochemistry, molecular spectra, and workflow design. ⏳ Deadline: 15 July 2026 #CompChem
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VIAMD @viamd.bsky.social · 13/05/2026
#compchem
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Reposted by VIAMD
Mathieu Linares @mathieulinares.bsky.social · 27/04/2026
#compchem article by Yogesh Todarwal, "MD Study of the Binding of Cationic, Anionic, and Neutral Luminescent Conjugated Ligands to the Alzheimer Folds of Aβ(1–42) and Tau Fibrils" in ChemBioChem ( doi.org/10.1002/cbic...). Simulations with @gromacs.bsky.social and analysis with @viamd.bsky.social.
doi.org
Molecular Dynamics Study of the Binding of Cationic, Anionic, and Neutral Luminescent Conjugated Ligands to the Alzheimer Folds of Aβ(1–42) and Tau Fibrils
Atomistic simulations reveal selective binding of luminescent ligands to amyloid fibrils. Highly charged anionic ligands, pFTAA and qFTAA-CN, bind strongly to Aβ(1–42) and tau through Coulombic inter...
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VIAMD @viamd.bsky.social · 14/04/2026
VIAMD now supports reading DCD trajectory files. You can load and analyze trajectories directly within VIAMD as with other formats by first dropping a pdb file followed by a dcd trajectory. Give it a try and let me know what you think! github.com/scanberg/via... #VIAMD #MolecularDynamics #Compchem
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VIAMD @viamd.bsky.social · 03/03/2026
You can now define some default coloring per element in VIAMD. On top of it, you can choose a specific atom-type coloring. Also works for @veloxchem.bsky.social files. #compchem
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Reposted by VIAMD
VeloxChem @veloxchem.bsky.social · 02/03/2026
#compchem colleagues, Want to learn about @veloxchem.bsky.social and @viamd.bsky.social? Join us at The eChem workshop "Quantum Chemistry with Jupyter Notebooks", will take place in Marseille (France) from May 18th to May 22nd, 2026. Information & registration: echemarseille26.sciencesconf.org
echemarseille26.sciencesconf.org
Quantum Chemistry with Jupyter Notebooks : eChem workshop in Marseille 2026 - Sciencesconf.org
Exploring Molecular Systems
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VIAMD @viamd.bsky.social · 27/02/2026
Have a jiggly weekend! #compchem
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VIAMD @viamd.bsky.social · 07/08/2025
#compchem You can use viamd to read and analyze @veloxchem.bsky.social output file. You can read more about it following this link: github.com/scanberg/via...
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VIAMD @viamd.bsky.social · 01/07/2025
You can now save Ultra HD (8k) resolution screenshot in VIAMD, with or without the GUI. Here illustrated on a visualization of a Moebius ring calculated with @veloxchem.bsky.social. #compchem
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Reposted by VIAMD
VeloxChem @veloxchem.bsky.social · 21/06/2025
Road trip to #watoc! See you there. #compchem
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Reposted by VIAMD
Mathieu Linares @mathieulinares.bsky.social · 18/06/2025
See you there. I'll be at the @veloxchem.bsky.social booth. Presenting our QM software as well as @viamd.bsky.social. #WATOC #compchem
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Reposted by VIAMD
Siewert-Jan Marrink @cg-martini.bsky.social · 07/06/2025
Registration deadline June 15 approaching ....
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BioExcel CoE @bioexcelcoe.bsky.social · 04/06/2025
Get inside a bacterial cell with this cool combination of @cg-martini.bsky.social and @viamd.bsky.social Also check out our recent webinars on each: 🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90 🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
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Siewert-Jan Marrink @cg-martini.bsky.social · 03/06/2025
MA(R/S)TINI 3: An Enhanced Coarse-Grained Force Field for Accurate Modeling of Cyclic Peptide Self-Assembly and Membrane Interactions | Journal of Chemical Theory and Computation pubs.acs.org/doi/full/10....
pubs.acs.org
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Reposted by VIAMD
Mathieu Linares @mathieulinares.bsky.social · 02/06/2025
Interactive visualization of @cg-martini.bsky.social bacterial cell with @viamd.bsky.social. #compchem @gromacs.bsky.social
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VeloxChem @veloxchem.bsky.social · 27/05/2025
In addition to our website veloxchem.org, we are now opening the discussion on github, this is the place to exchange and ask questions about veloxchem (github.com/orgs/VeloxCh...). #compchem
veloxchem.org
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Reposted by VIAMD
VeloxChem @veloxchem.bsky.social · 12/05/2025
Want to know more about Veloxchem and @viamd.bsky.social. Join us for a hands-on workshop and learn how to unlock the power of @lumi-supercomputer.eu for quantum chemistry using VeloxChem! Date and Place: May 26–27, 2025, CSC. Info and registration: csc.fi/en/training-... #compchem
csc.fi
VeloxChem on LUMI workshop - CSC
This workshop introduces participants to quantum chemistry simulations using VeloxChem on the LUMI supercomputer, with a focus on utilizing the GPU resources on LUMI-G for high-performance electronic ...
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Reposted by VIAMD
LUMIhpc @lumi-supercomputer.eu · 25/04/2025
🔬 Into quantum chemistry + HPC? Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland! 💡 Learn to: Run VeloxChem via Jupyter Scale jobs on LUMI's GPUs with Slurm Analyze results with VIAMD Info + signup 👉 lumi-supercomputer.eu/events/velox... lumi-supercomputer.eu/events/velox...
New course available. Register today!
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VIAMD @viamd.bsky.social · 23/04/2025
New feature! You can now visualize trajectories with bond formation and breaking by checking the Recalc Bonds option. #compchem
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VIAMD @viamd.bsky.social · 07/04/2025
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵
youtu.be
VIAMD - Quick Overview
YouTube video by mathieu linares
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VIAMD @viamd.bsky.social · 03/04/2025
Hi #compchem people of Bluesky. Follow us for updates on our latest developments.
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