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The Daily Pub

@thedailypub.bsky.social
241 followers 623 following 4.3K posts

Posting bioinformatics-related publications daily Sourced from PubMed: pubmed.ncbi.nlm.nih.gov A product of MAB: midauthorbio.com Follow us at: bsky.app/profile/midauthorbio.bsky.…

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The Daily Pub @thedailypub.bsky.social · 4h
Genetic and microbiomics approaches allow the monitoring of the growth of Dermatophagoides pteronyssinus cultures and their environmental influences.
doi.org
Genetic and microbiomics approaches allow the monitoring of the growth of Dermatophagoides pteronyssinus cultures and their environmental influences.
Published in PloS one
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The Daily Pub @thedailypub.bsky.social · 10h
PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN.
doi.org
PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN.
Published in Nucleic acids research
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The Daily Pub @thedailypub.bsky.social · 10h
Population diversity and accelerated mutation drive anaerobic bacterial adaptation during long-term solvent stress.
doi.org
Population diversity and accelerated mutation drive anaerobic bacterial adaptation during long-term solvent stress.
Published in mSystems
011
The Daily Pub @thedailypub.bsky.social · 04/10/2026
Comparative evaluation of low-temperature storage strategies for fresh beef: Insights into physicochemical quality, microstructure, and bacterial community.
doi.org
Comparative evaluation of low-temperature storage strategies for fresh beef: Insights into physicochemical quality, microstructure, and bacterial community.
Published in Food research international (Ottawa, Ont.)
010
The Daily Pub @thedailypub.bsky.social · 04/10/2026
Multi-level metabolic engineering for squalene production: from pathway optimization to systematic regulation.
doi.org
Multi-level metabolic engineering for squalene production: from pathway optimization to systematic regulation.
Published in World journal of microbiology & biotechnology
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The Daily Pub @thedailypub.bsky.social · 03/10/2026
The CUP pilus SMF-1 utilizes a specific antiparallel bundling mechanism to initiate biofilm formation.
doi.org
The CUP pilus SMF-1 utilizes a specific antiparallel bundling mechanism to initiate biofilm formation.
Published in Cell reports
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The Daily Pub @thedailypub.bsky.social · 02/10/2026
Geochemical Evidence for the Evolution of the Deyang-Anyue Rift in the Ediacaran-Cambrian Period on the Northwestern Margin of the Yangtze Block.
doi.org
Geochemical Evidence for the Evolution of the Deyang-Anyue Rift in the Ediacaran-Cambrian Period on the Northwestern Margin of the Yangtze Block.
Published in ACS omega
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The Daily Pub @thedailypub.bsky.social · 02/10/2026
Evolution of fine structure and pasting properties in wheat starch during medium-high-temperature Daqu fermentation.
doi.org
Evolution of fine structure and pasting properties in wheat starch during medium-high-temperature Daqu fermentation.
Published in Food research international (Ottawa, Ont.)
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The Daily Pub @thedailypub.bsky.social · 02/10/2026
Climate-driven adaptive microevolution in wild yeasts.
doi.org
Climate-driven adaptive microevolution in wild yeasts.
Published in Proceedings of the National Academy of Sciences of the United States of America
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The Daily Pub @thedailypub.bsky.social · 02/10/2026
Constitutive sporulation in wild fission yeast enhances insect-mediated survival.
doi.org
Constitutive sporulation in wild fission yeast enhances insect-mediated survival.
Published in Proceedings of the National Academy of Sciences of the United States of America
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The Daily Pub @thedailypub.bsky.social · 02/10/2026
Population density constrains coexistence of cooperative and cheating Kluyveromyces lactis through frequency-dependent physical interactions.
doi.org
Population density constrains coexistence of cooperative and cheating Kluyveromyces lactis through frequency-dependent physical interactions.
Published in PloS one
000
The Daily Pub @thedailypub.bsky.social · 01/10/2026
Capsular Polysaccharide Safeguards a Prophage-Bacterium Symbiosis by Preventing Collateral Attack and Promoting Viral Transmission.
doi.org
Capsular Polysaccharide Safeguards a Prophage-Bacterium Symbiosis by Preventing Collateral Attack and Promoting Viral Transmission.
Published in bioRxiv : the preprint server for biology
021
The Daily Pub @thedailypub.bsky.social · 01/10/2026
Intrinsic Disorder as a New Frontier in Antimicrobial Resistance and Bacterial Fitness.
doi.org
Intrinsic Disorder as a New Frontier in Antimicrobial Resistance and Bacterial Fitness.
Published in MicrobiologyOpen
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The Daily Pub @thedailypub.bsky.social · 01/10/2026
Two distinct alcohol dehydrogenase classes mediate bacterial 2-hydroxyethylphosphonate catabolism.
doi.org
Two distinct alcohol dehydrogenase classes mediate bacterial 2-hydroxyethylphosphonate catabolism.
Published in Protein science : a publication of the Protein Society
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The Daily Pub @thedailypub.bsky.social · 01/10/2026
Advancements in the Absorption, Metabolism, and Transport Mechanisms of HPPD Inhibitor Herbicides in Soil-Plant System.
doi.org
Advancements in the Absorption, Metabolism, and Transport Mechanisms of HPPD Inhibitor Herbicides in Soil-Plant System.
Published in Environmental research
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The Daily Pub @thedailypub.bsky.social · 01/10/2026
Stability in flexibility: Shifting alliances stabilize the symbioses of marine animals over 150 million years.
doi.org
Stability in flexibility: Shifting alliances stabilize the symbioses of marine animals over 150 million years.
Published in Science advances
022
The Daily Pub @thedailypub.bsky.social · 30/09/2026
Parallel evolution of chimeric genes in microbial evolution experiments.
doi.org
Parallel evolution of chimeric genes in microbial evolution experiments.
Published in Microbial genomics
011
The Daily Pub @thedailypub.bsky.social · 30/09/2026
Computational framework-guided engineering of microbial transglutaminase enables site-specific conjugation of Trastuzumab.
doi.org
Computational framework-guided engineering of microbial transglutaminase enables site-specific conjugation of Trastuzumab.
Published in Bioorganic chemistry
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The Daily Pub @thedailypub.bsky.social · 30/09/2026
Biosynthetic origin of anticancer dolastatin 15 reveals a noncanonical NRPS architecture enabling 2-keto acid activation.
doi.org
Biosynthetic origin of anticancer dolastatin 15 reveals a noncanonical NRPS architecture enabling 2-keto acid activation.
Published in Proceedings of the National Academy of Sciences of the United States of America
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The Daily Pub @thedailypub.bsky.social · 29/09/2026
Nanomedicine against antimicrobial resistance: mechanistic insights and next-generation therapeutic potential.
doi.org
Nanomedicine against antimicrobial resistance: mechanistic insights and next-generation therapeutic potential.
Published in Frontiers in chemistry
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The Daily Pub @thedailypub.bsky.social · 29/09/2026
Microenvironment-Responsive Nanomaterials for Colorectal Anastomotic Healing: A Signal-Threshold-Response Framework for Stage-Adaptive Repair.
doi.org
Microenvironment-Responsive Nanomaterials for Colorectal Anastomotic Healing: A Signal-Threshold-Response Framework for Stage-Adaptive Repair.
Published in International journal of nanomedicine
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The Daily Pub @thedailypub.bsky.social · 29/09/2026
A microbial therapy-mimicry assay shows how spatial resource dynamics control resistance escape.
doi.org
A microbial therapy-mimicry assay shows how spatial resource dynamics control resistance escape.
Published in Nature ecology & evolution
001
The Daily Pub @thedailypub.bsky.social · 27/09/2026
Thermal adaptation of Lactiplantibacillus plantarum by laboratory evolution does not enhance tagatose biosynthesis.
doi.org
Thermal adaptation of Lactiplantibacillus plantarum by laboratory evolution does not enhance tagatose biosynthesis.
Published in Letters in applied microbiology
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The Daily Pub @thedailypub.bsky.social · 27/09/2026
Temperate bacteriophages shape intraspecies competition during Pseudomonas aeruginosa Infection.
doi.org
Temperate bacteriophages shape intraspecies competition during Pseudomonas aeruginosa Infection.
Published in The ISME journal
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The Daily Pub @thedailypub.bsky.social · 27/09/2026
Uranium Isotope Evidence for Persistent Global Ocean Anoxia Across the Ediacaran-Cambrian Transition in Siberia.
doi.org
Uranium Isotope Evidence for Persistent Global Ocean Anoxia Across the Ediacaran-Cambrian Transition in Siberia.
Published in Geobiology
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Volatilomic Profiling of Early-Stage Biotransformation Enables Identification of Diagnostic Volatiles in Escherichia coli-Contaminated Chicken Meat.
doi.org
Volatilomic Profiling of Early-Stage Biotransformation Enables Identification of Diagnostic Volatiles in Escherichia coli-Contaminated Chicken Meat.
Published in Foods (Basel, Switzerland)
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Active Packaging, Fruit Volatilome, and the Preservation of Taste and Aroma Quality in Fresh Fruits: A Review.
doi.org
Active Packaging, Fruit Volatilome, and the Preservation of Taste and Aroma Quality in Fresh Fruits: A Review.
Published in Foods (Basel, Switzerland)
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Aquaculture Pathogens and Antimicrobial Resistance: A One Health Perspective.
doi.org
Aquaculture Pathogens and Antimicrobial Resistance: A One Health Perspective.
Published in International journal of molecular sciences
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Deployment Readiness of Anammox for Wastewater Treatment with Potential Carbon-Saving Benefits: Environmental Risks, Monitoring Requirements and Implementation Pathways.
doi.org
Deployment Readiness of Anammox for Wastewater Treatment with Potential Carbon-Saving Benefits: Environmental Risks, Monitoring Requirements and Implementation Pathways.
Published in Microorganisms
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
From Gut Microbiota to Hepatic Pre-Metastatic Niches: Mechanism and Translational Prospects of the Gut-Liver Axis in Regulating Colorectal Cancer Liver Metastasis.
doi.org
From Gut Microbiota to Hepatic Pre-Metastatic Niches: Mechanism and Translational Prospects of the Gut-Liver Axis in Regulating Colorectal Cancer Liver Metastasis.
Published in Microorganisms
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Accelerated Adaptive Evolution of Gram-Negative Bacteria With a Broad-Host-Range Dual Base Editor.
doi.org
Accelerated Adaptive Evolution of Gram-Negative Bacteria With a Broad-Host-Range Dual Base Editor.
Published in Microbial biotechnology
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Scaling Phage-Bacteria Interaction Contexts: From Pairwise Mechanisms to Community Dynamics.
doi.org
Scaling Phage-Bacteria Interaction Contexts: From Pairwise Mechanisms to Community Dynamics.
Published in Annual review of virology
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The Daily Pub @thedailypub.bsky.social · 26/09/2026
Antibiotic-resistant pathogens and heavy metal-tolerant bacteria in Batissa violacea: A study from the Ba River, Fiji.
doi.org
Antibiotic-resistant pathogens and heavy metal-tolerant bacteria in Batissa violacea: A study from the Ba River, Fiji.
Published in PloS one
002
The Daily Pub @thedailypub.bsky.social · 25/09/2026
Hijacking host RNA polymerase for processive in situ mutagenesis.
doi.org
Hijacking host RNA polymerase for processive in situ mutagenesis.
Published in Synthetic and systems biotechnology
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
Selection bias in microbial mutation accumulation studies and the impact of colony growth.
doi.org
Selection bias in microbial mutation accumulation studies and the impact of colony growth.
Published in Genetics
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
[Advances and applications of microbial genome evolution engineering].
doi.org
[Advances and applications of microbial genome evolution engineering].
Published in Sheng wu gong cheng xue bao = Chinese journal of biotechnology
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
[Advances in automated enrichment and directed domestication technologies and their applications in the development of environmental functional microorganisms].
doi.org
[Advances in automated enrichment and directed domestication technologies and their applications in the development of environmental functional microorganisms].
Published in Sheng wu gong cheng xue bao = Chinese journal of biotechnology
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
Structural Design of Ceramic Membranes to Mitigate Fouling in Membrane Bioreactors.
doi.org
Structural Design of Ceramic Membranes to Mitigate Fouling in Membrane Bioreactors.
Published in Membranes
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
Microbial communities and volatile profiles heterogeneity in a Mars-analogue volcanic lake.
doi.org
Microbial communities and volatile profiles heterogeneity in a Mars-analogue volcanic lake.
Published in Microbiological research
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
Microbial community dynamics in a traditional Swiss mountain cheese over 142 years of cheesemaking.
doi.org
Microbial community dynamics in a traditional Swiss mountain cheese over 142 years of cheesemaking.
Published in Current biology : CB
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The Daily Pub @thedailypub.bsky.social · 25/09/2026
Comparative genomics and tadpole intestinal metabarcoding suggest a potential cyanobacteria-amphibian trophic link in hot-spring ecosystems.
doi.org
Comparative genomics and tadpole intestinal metabarcoding suggest a potential cyanobacteria-amphibian trophic link in hot-spring ecosystems.
Published in Frontiers in microbiology
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The Daily Pub @thedailypub.bsky.social · 24/09/2026
Firewalled synthetic commensal blocks horizontal gene transfer in the gut.
doi.org
Firewalled synthetic commensal blocks horizontal gene transfer in the gut.
Published in bioRxiv : the preprint server for biology
001
The Daily Pub @thedailypub.bsky.social · 24/09/2026
Mapping the evolutionary path towards multi-drug resistance in the pandemic Escherichia coli ST131 lineage.
doi.org
Mapping the evolutionary path towards multi-drug resistance in the pandemic Escherichia coli ST131 lineage.
Published in Microbial genomics
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The Daily Pub @thedailypub.bsky.social · 23/09/2026
[Current research status of the intratumoral microbiome and evolution of detection technologies].
doi.org
[Current research status of the intratumoral microbiome and evolution of detection technologies].
Published in Zhonghua zhong liu za zhi [Chinese journal of oncology]
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The Daily Pub @thedailypub.bsky.social · 23/09/2026
Decoding microbial fructosyltransferases: Structural insights, molecular engineering, and biotechnological applications.
doi.org
Decoding microbial fructosyltransferases: Structural insights, molecular engineering, and biotechnological applications.
Published in Biotechnology advances
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The Daily Pub @thedailypub.bsky.social · 23/09/2026
Amphipods associate with epibiotic filamentous bacteria at a shallow-water hydrothermal vent.
doi.org
Amphipods associate with epibiotic filamentous bacteria at a shallow-water hydrothermal vent.
Published in Biology letters
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The Daily Pub @thedailypub.bsky.social · 22/09/2026
mGem: The two-decade evolution of in vivo coral microbiome manipulations.
doi.org
mGem: The two-decade evolution of in vivo coral microbiome manipulations.
Published in mBio
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The Daily Pub @thedailypub.bsky.social · 22/09/2026
Mineralization-driven functional zonation of a PD-FAP granular system for coupled nitrite supply and fluoride removal.
doi.org
Mineralization-driven functional zonation of a PD-FAP granular system for coupled nitrite supply and fluoride removal.
Published in Water research
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The Daily Pub @thedailypub.bsky.social · 22/09/2026
Universal single-copy genes and 16S rDNA present incongruent evolutionary histories in vibrio.
doi.org
Universal single-copy genes and 16S rDNA present incongruent evolutionary histories in vibrio.
Published in Molecular phylogenetics and evolution
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The Daily Pub @thedailypub.bsky.social · 22/09/2026
Clay and organic matter interaction in the biogeochemical genesis of alkaline soda-lake water.
doi.org
Clay and organic matter interaction in the biogeochemical genesis of alkaline soda-lake water.
Published in Biologia futura
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