Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 10/04/2025A model evaluated 234 toxic and 596 non-toxic compounds using structural fingerprints and achieved an F1 score of 0.440; what could be wrong? Of course, one answer is that it’s a great model. What’s another possibility? 140
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 22/01/2025pip install infoalign! Add biological information to your chemcial fingerprints, using only SMILES as input! I'm thrilled to share that our paper "Learning Molecular Representation in a Cell" has been accepted to ICLR 2025! 🎉 2211
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 20/12/2024I did the experiment myself! Having an Android phone saves you 25% costs and the phone pays for itself in 10 Uber rides! Uber and other apps cost up to 30% more on iPhones than on Androids for the same orders. Don’t get me wrong, by all means buy an iPhone! Keep an Android on the side for orders 🤪 160
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 06/12/2024When the size of test data is 5 compounds and accuracy is 100% 😌 1151
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 05/12/2024What is Cell Painting? It's a microscopy-based, high-content assay that uses six fluorescent dyes to "paint" cells, capturing thousands of features like size, shape, texture, and intensity. The goal? Reveal cellular responses to perturbations in a target-agnostic way. 110
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 26/11/2024Do you want to make biological sense of Cell Painting images? Try BioMorph! BioMorph maps CellProfiler features to a new feature space that’s more interpretable and contains the same signal strength. Try it at broad.io/BioMorph ! 070
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 23/11/2024PKSmart v3.0 is now live! pk-predictor.serve.scilifelab.se PKSmart is an open-source app we built to predict human and animal pharmacokinetic parameters. Publication is coming soon and is also available for local implementation via pip install pksmart. 1195
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 22/11/2024Ask ChatGPT, “based on what you know about me, generate an image of what you think my current life looks like” I won’t lie, I like Catan. 270
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 21/11/2024Make your own word cloud from Google scholar! shiny.rcg.sfu.ca/u/rdmorin/sc... 061
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 17/11/2024The Cambridge (MA) Cheminformatics meetings are free to join! broad.io/ccm Sign up today! 271
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 16/11/2024DILIPredictor is now live! If you want to predict Liver Toxicity from chemical structures try out broad.io/DILiPredictor! #cheminformatics #toxicity #drugdiscovery #liver 030
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 09/03/2024Have you ever wondered why we apply ML to biological problems? We propose that conceptions of scientific understanding as information compression, qualitative intelligibility, and dependency relation modelling provide a useful framework for ML in Biology. 030
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 26/01/2024New Publication Alert! We started with a null library with excellent pharmacokinetics (DMPK) but no initial target potency. By applying MolDQN, a generative model, we successfully integrated activity against α-synuclein aggregation in Parkinson’s disease. pubs.acs.org/doi/full/10.... 020