iiinova — where your digital self keeps evolving

Paul Ritsche @ritpau.bsky.social · 02/06/2025

(3/3) we used the benchmark dataset proposed in Ritsche & Sarto et al. (2025) osf.io/preprints/os... for reproducible and comparable algorithm performance analysis. @mvfranchi.bsky.social @fabiosartophd.bsky.social @olivierseynnes.bsky.social

osf.io

OSF

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Paul Ritsche @ritpau.bsky.social · 02/06/2025

(2/3) Compared to a recent publication by Van der Zee et al. we show: 1. Improvement of new DL_Track_US models 2. Higher comparability between both approaches 3. Comparison of four different model types 💡Details in the news section of the docs ⤵ paulritsche.github.io/DL_Track_US/...

paulritsche.github.io

News - DL_Track_US

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Paul Ritsche @ritpau.bsky.social · 02/06/2025

🚨 DL_Track_US NEWS 🚨 (1/3) A new release (v0.3.0) 🎉 including: ✅ information transfer between frames ✅ improved UI with live analysis visualization ✅ installation wizard for easy usage ✅ faster processing Check out the new docs for more info ⤵ paulritsche.github.io/DL_Track_US/...

paulritsche.github.io

DL_Track_US

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Paul Ritsche @ritpau.bsky.social · 25/04/2025

⏭️ Next up: ⬆️ increase comparability to MR assessed muscle volume by: 🔍 objectifying calibration methods 🐍 automate image analysis

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Paul Ritsche @ritpau.bsky.social · 25/04/2025

🚨New Preprint 🚨 3D Ultrasound is… ✅ reliable between sessions for muscle volume ✅ valid for ground truth phantom assessment 🔗 doi.org/10.31219/osf... 🔬Methods docs: github.com/AurelieSar/3... @mrifranz.bsky.social With Michele Pansini, Romina Ledergerber & Oliver Faude

doi.org

OSF

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Reposted by Paul Ritsche

Dr J G Inglis @drjginglis.bsky.social · 29/01/2025

🚨 Registration Open! 🚨 Join us in Brescia 🇮🇹 for the INcEPTION Winter School 2025 on HDsEMG! 📅 10th–14th March 2025 📍 In-person only | Limited spots! ✅ No registration fee Don't miss this opportunity! Find further details here: forms.gle/EY4wNMnbYRn9nT…

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Paul Ritsche @ritpau.bsky.social · 28/01/2025

UMUD is here to support muscle ultrasound research, but we can't do it alone... We need YOU to: 🤝 Contribute datasets & annotations 🔬 Test & refine algorithms 💬 Share insights & ideas Together, we can foster open science and reproducible research in ultrasound imaging 🤗

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Paul Ritsche @ritpau.bsky.social · 28/01/2025

What else does UMUD include? 🤔 📊 Indexing (so far) 11 datasets with 75,569 images & 2,573 videos from 1,769 participants. 🔍 Detailed metadata for easy dataset exploration: muscle groups, devices, demographics, & more. 💡 Guidance on state-of-the-art automated analysis tools

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Paul Ritsche @ritpau.bsky.social · 28/01/2025

A Universal Musculoskeletal Ultrasound Database: 📀 Open data 📊 Benchmarks 🧠 Expert-analyzed datasets @fabiosartophd.bsky.social @olivierseynnes.bsky.social @mrifranz.bsky.social 🌐 web app: universalmuscledatabase.streamlit.app 📜preprint: doi.org/10.31219/osf...

universalmuscledatabase.streamlit.app

UMUD

This app was built in Streamlit! Check it out and visit https://streamlit.io for more awesome community apps. 🎈

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Paul Ritsche @ritpau.bsky.social · 24/11/2024

⚠️ DeepACSA News ⚠️ ✅ trained with ultrasonography images, automatic muscle CSA analysis works on populations with ACL rupture as well 🔜 Models will be available online. Amazing efforts from Beyza Tayfur & Team and team! #Muscle #ImageAnalysis #DeepACSA Article link ⬇️ t.co/8kOW2TdO8J

t.co

https://authors.elsevier.com/c/1k90a14aKMzdFV

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Reposted by Paul Ritsche

Xeni Deligianni (she/hers) @xenidel.bsky.social · 19/11/2024

Join us in the Reproducibilitea Unibasel this Thursday for the next invited talk “Reproducible Research: An Introduction to The Turing Way and Binder” by Sarah Gibson @turingway Registration: www.eventbrite.com/e/reproducib...

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Paul Ritsche @ritpau.bsky.social · 07/06/2024

⚠️ #openhdemg news ⚠️ 📅Come visit us at the SwissRN congress in Zurich next Monday (10.06). ✅Learn about #openhdemg (github.com/GiacomoValli...) and reproducibility 🖥️Congress program: www.reproducibility.ch

reproducibility.ch

Personalized Health Technologies

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Paul Ritsche @ritpau.bsky.social · 18/10/2023

❗️DL_Track_US News ❗️ *DL_Track_US is a software to automatically analyse fascicle behaviour in dynamic ultrasonography scans* 🆕v0.2.1 is now on pypi and available as .exe Including: ✅Fascicle filtering ✅Mask inspection ⬇️Check it out #SciSky osf.io/7mjsc/ (the repo is now on OSF)

osf.io

DL_Track_US

This repository contains the example data for the DL_Track_US algorithm. Here, we provide the pre-trained aponeuroses and fascicle neural networks, the training images as well as example and test data...

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Paul Ritsche @ritpau.bsky.social · 09/10/2023

First Post on #SciSky 🧪 We recently created DeepACSA to automatically analyse muscle ACSA in ultrasonography images 💪 ❗ We released a new version ❗ New features: ✅ Labelling of images in GUI ✅ Inspection of Labels in GUI ✅ Restructured GUI Check it out ⏬ github.com/PaulRitsche/DeepACSA/tree/main

github.com

GitHub - PaulRitsche/DeepACSA: Automated measurement of muscle anatomical cross-sectional area in ul...

Automated measurement of muscle anatomical cross-sectional area in ultrasound images using deep learning - GitHub - PaulRitsche/DeepACSA: Automated measurement of muscle anatomical cross-sectional ...

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Reposted by Paul Ritsche

Dan Quintana @dsquintana.bsky.social · 04/10/2023

Here’s a recording of a recent talk on how open science practices can improve research reproducibility, in which I begin by describing the events that led to my interest in open science youtu.be/UDaSaE67E3Y?...

youtu.be

Open Science Basel Year 4 #1 - Daniel S. Quintana

First lecture of the fourth year of the Open Science Seminar Series at the University of Basel. Presentation by Daniel S. Quintana on "How Open Science pract...

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Paul Ritsche @ritpau.bsky.social · 30/09/2023

I’m Paul 👋🏼 I study muscle architecture using ultrasonography and how it adapts during maturation, ageing or due to training. I try to automate the analysis of (EFOV) muscle ultrasonography because I got tired of clicking on images. I am currently working in 🇨🇭

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