Reposted by resgen.iotrevor manz @manzt.sh · 02/03/2026spent some time last weekend getting higlass to play nicely inside @marimo.io molab.marimo.io/notebooks/nb... 193
resgen.io @resgen-io.bsky.social · 23/01/2026From there, it's the normal resgen interface except that the current project is the current directory. If this sounds a lot like the erstwhile higlass-manage functionality, it is because it's modeled after it. Just with more sophisticated directory and metadata handling. 000
resgen.io @resgen-io.bsky.social · 23/01/2026To get started, install resgen-python, start an instance in any directory, create a user, sync data and open browser: pip install resgen-python resgen manage start . resgen manage create-user resgen manage sync-datasets 100
resgen.io @resgen-io.bsky.social · 23/01/2026Alright, it's still very much a work in progress, but you can now run resgen locally to view data that's on your machine without uploading to resgen.io. docs.resgen.io/local/runnin... 141
resgen.io @resgen-io.bsky.social · 19/11/2025Small new feature: the ability to collapse tracks to free up space. Thanks to Johan Gibcus for the suggestion! 020
resgen.io @resgen-io.bsky.social · 08/07/2025Did you know oxbow powers resgen? We use it to load bam and bigwig tiles. Great library! 040
resgen.io @resgen-io.bsky.social · 16/04/2025Small but satisfying update over the weekend to (mostly) sync the styling between the main page and docs page: 000
resgen.io @resgen-io.bsky.social · 04/02/2025Pssst 🤫... you can also try this live with @genomeinabottle.bsky.social data here: resgen.io/paper-data/Z...resgen.ioReservoir Genome Browser - Sort by base demo 031
resgen.io @resgen-io.bsky.social · 06/01/2025New year, new home page! Trying to make it easier to get to recently viewed projects and views. Access via the "home" button on the top menu bar when logged in. Also added a small news feed to highlight recent updates you may or may not have noticed. Happy new year!! 000
resgen.io @resgen-io.bsky.social · 28/12/2024I guess BLAST does this but its indexes are pretty hefty. 100
resgen.io @resgen-io.bsky.social · 27/12/2024I wonder what it would take to search for a single sequence that may vary from 100 - 10k nt in length across hundreds of vertebrate genomes in less than a second 🤔. Surely the index needs to be loaded into memory. Minimap2 seems promising or an online version of BWA? 120
resgen.io @resgen-io.bsky.social · 19/12/2024And of course, a live link for anybody wishing to try this out themselves: resgen.io/l/?d=YrhQaXb...resgen.ioReservoir Genome Browser 000
resgen.io @resgen-io.bsky.social · 19/12/2024Pileup support is shaping up to be both performant and beautiful thanks to the Rust powered Oxbow package: github.com/abdenlab/oxb... Big shout out to @nvictus.bsky.social and @manzt.sh for implementing key features like buffering and file-like pointer support! 1165
resgen.io @resgen-io.bsky.social · 03/12/2024Not terribly mobile friendly either 🤔. Will have to work on that. 000
resgen.io @resgen-io.bsky.social · 03/12/2024Got a version of paired-end read pileups out. The aesthetics are nice but the layout algorithm needs some work. Still not quite ready for prime time. Nevertheless, here's a link to try it out with data from a Gorilla genome from Yoo et al. 2024 (Eichler lab). resgen.io/paper-data/Y... 120
resgen.io @resgen-io.bsky.social · 11/11/2024Less noticeable are back end updates to the UI framework. This brings it up to date and eliminates a large amount of technical debt. Large changes invariable introduce some instability. Please excuse the inconvenience and reach out if you encounter any issues. 000
resgen.io @resgen-io.bsky.social · 11/11/2024Also, some minor UI cleanups. Notably, the entire dataset can be dragged onto the browser to view. 100
resgen.io @resgen-io.bsky.social · 11/11/2024Big update over the weekend: datasets can now be organized into folders! Also, the default ordering for projects is by the last time they were opened. Soon to come is an option to select how they are ordered. 142
resgen.io @resgen-io.bsky.social · 25/10/2024If this existed, one could mirror an entire directory tree in a resgen project, just like github. 000
resgen.io @resgen-io.bsky.social · 25/10/2024Thinking of making the tilesets list support nesting, like a file browser 🤔. Tags and descriptions wouldn't change. 100
