Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026Interested in KG-Microbe graph embeddings? Don't hesitate to reach out! #KGMicrobe #Microbiology #KnowledgeGraphs #OpenScience 000
Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026Explore the code and download the graphs: GitHub: github.com/Knowledge-Gr... KG-Registry downloads: kghub.org/kg-registry/...github.comGitHub - Knowledge-Graph-Hub/kg-microbeContribute to Knowledge-Graph-Hub/kg-microbe development by creating an account on GitHub. 111
Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026Special thanks to Mark Miller and Sujay Patil! 100
Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026Huge shout-out to my coauthors for this milestone: Brook Santangelo, Harshad Hegde, J. Harry Caufield @severaltimes.bsky.social, Justin Reese @justaddcoffee.bsky.social , Tomáš Kliegr, Lawrence Hunter @proflhunter.bsky.social, Catherine Lozupone, and Chris Mungall @cmungall.bsky.social! 130
Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026We continue to onboard key microbial data sources, and the KG has grown severalfold since we submitted this work! Stay tuned for papers on predicting cultivation conditions for novel isolates, critical minerals bioprocessing, and microbial community design. 100
Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026Standardization is a core principle: every node represents an ontology term or standardized entity with an identifier, label, and description. We co-developed METPO to support this, bringing together the largest collection of complex microbial traits in KG-Microbe. 110
Marcin P. Joachimiak @realmarcin.bsky.social · 15/09/2026Our KG-Microbe paper is out in GigaScience—a milestone project introducing the first comprehensive, standardized knowledge graph for the microbiology of bacteria and archaea! doi.org/10.1093/giga... 154
